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CARSLU_59

Alias: CARSLU_29

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CARSLU_59_1
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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110..889
DNA (780bp) protein (260aa)
slam; putative extracellular amidase rbh
slam; putative extracellular amidase rbh
Extracellular amidase n=3 Tax=Staphylococcus lugdunensis RepID=E6M921_STALU (db=UNIREF evalue=1.0e-139 bit_score=499.0 identity=99.58 coverage=91.1538461538461)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
CARSLU_59_2
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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1431..3962
DNA (2532bp) protein (844aa)
protein export cytoplasm protein SecA ATPase RNA helicase
protein export cytoplasm protein SecA ATPase RNA helicase
coiled-coil (db=Coil db_id=coil from=40 to=61 evalue=NA)
coiled-coil (db=Coil db_id=coil from=11 to=39 evalue=NA)
CARSLU_59_3
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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4318..5319
DNA (1002bp) protein (334aa)
Peptide chain release factor 2 n=2 Tax=Staphylococcus lugdunensis RepID=D3QEK8_STALH (db=UNIREF evalue=0.0 bit_score=670.0 identity=99.7 coverage=99.4011976047904)
prfB; peptide chain release factor 2
prfB; peptide chain release factor 2
seg (db=Seg db_id=seg from=187 to=196)
CARSLU_59_4
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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5811..6782
DNA (972bp) protein (324aa)
N-acetylmuramoyl-L-alanine amidase n=2 Tax=Staphylococcus lugdunensis RepID=E6M918_STALU (db=UNIREF evalue=0.0 bit_score=648.0 identity=99.38 coverage=99.3827160493827)
hypothetical protein
hypothetical protein
(db=HMMPfam db_id=PF05257 from=213 to=323 evalue=1.1e-27 interpro_id=IPR007921 interpro_description=Cysteine, histidine-dependent amidohydrolase/peptidase)
CARSLU_59_5
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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6942..7583
DNA (642bp) protein (214aa)
Nucleotidase YfbR, HD superfamily n=2 Tax=Staphylococcus lugdunensis RepID=D3QEK6_STALH (db=UNIREF evalue=1.0e-121 bit_score=438.0 identity=100.0 coverage=99.0654205607477)
putative phosphohydrolase
putative phosphohydrolase
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=3 to=193 evalue=3.7e-34)
CARSLU_59_6
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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7589..7822
DNA (234bp) protein (78aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=45)
(db=HMMPfam db_id=PF09964 from=2 to=72 evalue=2.1e-32 interpro_id=IPR019242 interpro_description=Protein of unknown function DUF2198)
CARSLU_59_7
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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8541..10097
DNA (1557bp) protein (519aa)
excinuclease ABC subunit B
UvrABC system protein B n=102 Tax=Staphylococcus RepID=UVRB_STAAC (db=UNIREF evalue=0.0 bit_score=951.0 identity=92.47 coverage=99.6146435452794)
seg (db=Seg db_id=seg from=123 to=142)
coiled-coil (db=Coil db_id=coil from=116 to=151 evalue=NA)
CARSLU_59_8
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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10105..12999
DNA (2895bp) protein (965aa)
excinuclease ABC subunit A
excinuclease ABC subunit A
Excinuclease ABC subunit A n=2 Tax=Staphylococcus lugdunensis RepID=D3QEK3_STALH (db=UNIREF evalue=0.0 bit_score=1851.0 identity=97.72 coverage=97.720207253886)
seg (db=Seg db_id=seg from=343 to=359)
CARSLU_59_9
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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13369..14304
DNA (936bp) protein (312aa)
hprK; HPr kinase/phosphatase
hprK; HPr kinase/phosphatase
HPr kinase/phosphorylase n=3 Tax=Staphylococcus RepID=HPRK_STAHJ (db=UNIREF evalue=2.0e-138 bit_score=495.0 identity=89.27 coverage=92.3076923076923)
seg (db=Seg db_id=seg from=135 to=148)
CARSLU_59_10
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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14308..15156
DNA (849bp) protein (283aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-) rbh
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-) rbh
Prolipoprotein diacylglyceryl transferase n=2 Tax=Staphylococcus lugdunensis RepID=D3QEK1_STALH (db=UNIREF evalue=1.0e-145 bit_score=519.0 identity=99.29 coverage=99.2932862190813)
LGT (db=PatternScan db_id=PS01311 from=136 to=148 evalue=0.0 interpro_id=IPR001640 interpro_description=Prolipoprotein diacylglyceryl transferase GO=Biological Process: protein lipoylation (GO:0009249), Cellular Component: membrane (GO:0016020), Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757), Biological Process: lipoprotein biosynthetic process (GO:0042158))
CARSLU_59_11
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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15153..15632
DNA (480bp) protein (160aa)
O-acetyltransferase n=2 Tax=Staphylococcus lugdunensis RepID=D3QEK0_STALH (db=UNIREF evalue=4.0e-88 bit_score=326.0 identity=99.37 coverage=98.75)
putative acetyltransferase
putative acetyltransferase
HEXAPEP_TRANSFERASES (db=PatternScan db_id=PS00101 from=115 to=143 evalue=0.0 interpro_id=IPR018357 interpro_description=Hexapeptide transferase, conserved site GO=Molecular Function: transferase activity (GO:0016740))
CARSLU_59_12
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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15644..17083
DNA (1440bp) protein (480aa)
TPR domain protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QEJ9_STALH (db=UNIREF evalue=0.0 bit_score=981.0 identity=99.37 coverage=99.5833333333333)
hypothetical protein
hypothetical protein
TPR_REGION (db=ProfileScan db_id=PS50293 from=15 to=82 evalue=0.0 interpro_id=IPR013026 interpro_description=Tetratricopeptide repeat-containing GO=Molecular Function: protein binding (GO:0005515))
CARSLU_59_13
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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17148..18086
DNA (939bp) protein (313aa)
thioredoxin reductase (EC:1.8.1.9)
thioredoxin reductase (EC:1.8.1.9)
Thioredoxin reductase n=20 Tax=Staphylococcus RepID=TRXB_STAEQ (db=UNIREF evalue=2.0e-163 bit_score=578.0 identity=90.94 coverage=98.4025559105431)
PYRIDINE_REDOX_2 (db=PatternScan db_id=PS00573 from=134 to=154 evalue=0.0 interpro_id=IPR008255 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
CARSLU_59_14
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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18242..19153
DNA (912bp) protein (304aa)
UPF0042 nucleotide-binding protein SLGD_02062 n=2 Tax=Staphylococcus lugdunensis RepID=D3QEJ7_STALH (db=UNIREF evalue=1.0e-176 bit_score=622.0 identity=100.0 coverage=99.3421052631579)
hypothetical protein
hypothetical protein
Predicted P-loop kinase, YhbJ type (db=HMMPIR db_id=PIRSF005052 from=1 to=303 evalue=3.1e-157 interpro_id=IPR005337 interpro_description=ATPase, P-loop-containing GO=Molecular Function: ATP binding (GO:0005524))
CARSLU_59_15
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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19150..20157
DNA (1008bp) protein (336aa)
Putative uncharacterized protein n=2 Tax=Staphylococcus lugdunensis RepID=D3QEJ6_STALH (db=UNIREF evalue=0.0 bit_score=681.0 identity=100.0 coverage=99.4047619047619)
hypothetical protein
hypothetical protein
CofD_related: conserved hypothetical pro (db=HMMTigr db_id=TIGR01826 from=6 to=316 evalue=5.2e-178 interpro_id=IPR010119 interpro_description=Uncharacterised protein family UPF0052)
CARSLU_59_16
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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20203..21147
DNA (945bp) protein (315aa)
Putative sporulation transcription regulator whiA n=1 Tax=Staphylococcus lugdunensis HKU09-01 RepID=D3QEJ5_STALH (db=UNIREF evalue=1.0e-178 bit_score=629.0 identity=99.68 coverage=99.3650793650794)
hypothetical protein
hypothetical protein
MG103 (db=HMMTigr db_id=TIGR00647 from=1 to=303 evalue=1.79999999999997e-89 interpro_id=IPR003802 interpro_description=Sporulation regulator WhiA)
CARSLU_59_17
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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21896..22123
DNA (228bp) protein (76aa)
clpP; ATP-dependent Clp protease proteolytic subunit
ATP-dependent Clp protease proteolytic subunit n=106 Tax=Staphylococcaceae RepID=CLPP_STAA1 (db=UNIREF evalue=3.0e-33 bit_score=144.0 identity=93.33 coverage=97.3684210526316)
PROTEASE FAMILY S14 CLPP PROTEASE (db=HMMPanther db_id=PTHR10381 from=1 to=73 evalue=5.1e-31 interpro_id=IPR023562 interpro_description=Peptidase S14/S49)
(db=HMMPfam db_id=PF00574 from=1 to=72 evalue=7.6e-30 interpro_id=IPR001907 interpro_description=Peptidase S14, ClpP GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
CARSLU_59_18
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(22427..22795)
DNA (369bp) protein (123aa)
Cell division inhibitor n=2 Tax=Staphylococcus lugdunensis RepID=D3QEJ3_STALH (db=UNIREF evalue=9.0e-67 bit_score=255.0 identity=99.18 coverage=98.3739837398374)
hypothetical protein
SUGAR NUCLEOTIDE EPIMERASE RELATED (db=HMMPanther db_id=PTHR11092 from=1 to=121 evalue=1.6e-29 interpro_id=IPR010099 interpro_description=Sugar nucleotide epimerase YfcH, putative)
(db=HMMPfam db_id=PF08338 from=74 to=121 evalue=6.9e-20 interpro_id=IPR013549 interpro_description=Domain of unknown function DUF1731, C-terminal)
CARSLU_59_19
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23939..24568
DNA (630bp) protein (210aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=174 to=206)
seg (db=Seg db_id=seg from=60 to=117)
CARSLU_59_20
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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24921..25940
DNA (1020bp) protein (340aa)
Central glycolytic genes regulator n=2 Tax=Staphylococcus lugdunensis RepID=D3QEJ1_STALH (db=UNIREF evalue=0.0 bit_score=697.0 identity=99.71 coverage=99.4117647058823)
gapR; glycolytic operon regulator
gapR; glycolytic operon regulator
G3DSA:3.40.50.1360 (db=Gene3D db_id=G3DSA:3.40.50.1360 from=96 to=337 evalue=6.29999999999997e-88)
CARSLU_59_21
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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25988..26998
DNA (1011bp) protein (337aa)
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase 1 n=168 Tax=cellular organisms RepID=G3P1_STAAC (db=UNIREF evalue=3.0e-177 bit_score=624.0 identity=91.96 coverage=99.406528189911)
coiled-coil (db=Coil db_id=coil from=249 to=270 evalue=NA)
CARSLU_59_22
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27131..28321
DNA (1191bp) protein (397aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=18 Tax=Staphylococcus RepID=PGK_STAEQ (db=UNIREF evalue=0.0 bit_score=674.0 identity=90.15 coverage=99.4962216624685)
seg (db=Seg db_id=seg from=339 to=361)
CARSLU_59_23
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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28447..29208
DNA (762bp) protein (254aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1) rbh
tpiA; triosephosphate isomerase (EC:5.3.1.1) rbh
Triosephosphate isomerase n=5 Tax=Staphylococcus RepID=TPIS_STAHJ (db=UNIREF evalue=1.0e-135 bit_score=485.0 identity=92.09 coverage=99.2125984251969)
TIM_1 (db=PatternScan db_id=PS00171 from=167 to=177 evalue=0.0 interpro_id=IPR020861 interpro_description=Triosephosphate isomerase, active site GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807))
CARSLU_59_24
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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29211..30731
DNA (1521bp) protein (507aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=3 Tax=Staphylococcus RepID=GPMI_STAHJ (db=UNIREF evalue=0.0 bit_score=851.0 identity=90.1 coverage=99.4082840236686)
seg (db=Seg db_id=seg from=340 to=352)
CARSLU_59_25
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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30867..32180
DNA (1314bp) protein (438aa)
eno; putative enolase (EC:4.2.1.11) rbh
eno; putative enolase (EC:4.2.1.11) rbh
Enolase n=103 Tax=Staphylococcus RepID=ENO_STAA1 (db=UNIREF evalue=0.0 bit_score=837.0 identity=94.0 coverage=98.6301369863014)
ENOLASE (db=PatternScan db_id=PS00164 from=340 to=353 evalue=0.0 interpro_id=IPR020809 interpro_description=Enolase, conserved site GO=Cellular Component: phosphopyruvate hydratase complex (GO:0000015), Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: phosphopyruvate hydratase activity (GO:0004634), Biological Process: glycolysis (GO:0006096))
CARSLU_59_26
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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32471..32932
DNA (462bp) protein (154aa)
hypothetical protein
seg (db=Seg db_id=seg from=19 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
CARSLU_59_27
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33002..33235
DNA (234bp) protein (78aa)
preprotein translocase subunit SecG
Preprotein translocase subunit SecG n=2 Tax=Staphylococcus lugdunensis RepID=D3QEI4_STALH (db=UNIREF evalue=5.0e-17 bit_score=90.5 identity=98.7 coverage=97.4358974358974)
seg (db=Seg db_id=seg from=59 to=72)
seg (db=Seg db_id=seg from=5 to=16)
CARSLU_59_28
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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33884..34171
DNA (288bp) protein (96aa)
est; putative carboxylesterase (EC:3.1.1.1)
Lipase/esterase Est n=2 Tax=Staphylococcus lugdunensis RepID=E6M8Z4_STALU (db=UNIREF evalue=9.0e-49 bit_score=195.0 identity=100.0 coverage=97.9166666666667)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=6 to=93 evalue=3.4e-20)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=30 to=91 evalue=6.2e-11)
CARSLU_59_29
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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34212..36587
DNA (2376bp) protein (792aa)
3'-to-5' exoribonuclease RNase R
3'-to-5' exoribonuclease RNase R
3'-to-5' exoribonuclease RNase R n=2 Tax=Staphylococcus lugdunensis RepID=D3QEI2_STALH (db=UNIREF evalue=0.0 bit_score=1532.0 identity=99.49 coverage=97.979797979798)
seg (db=Seg db_id=seg from=745 to=768)
CARSLU_59_30
Staphylococcus lugdunensis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36609..37073
DNA (465bp) protein (155aa)
smpB; putative tmRNA-binding protein rbh
smpB; putative tmRNA-binding protein rbh
SsrA-binding protein n=57 Tax=Staphylococcus RepID=SSRP_STAA8 (db=UNIREF evalue=2.0e-79 bit_score=297.0 identity=94.16 coverage=98.7096774193548)
SSRP (db=PatternScan db_id=PS01317 from=28 to=40 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
Displaying 30 items

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