ggKbase home page

SCNpilot_BF_INOC_scaffold_120_69

Organism: SCNpilot_BF_INOC_Flavobacteriales_40_20

near complete RP 53 / 55 MC: 1 BSCG 50 / 51 ASCG 13 / 38
Location: 85138..85704

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IKK5_FLUTR similarity UNIREF
DB: UNIREF100
  • Identity: 53.2
  • Coverage: 188.0
  • Bit_score: 202
  • Evalue 4.20e-49
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 54.9
  • Coverage: 184.0
  • Bit_score: 205
  • Evalue 9.00e-50
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 54.1
  • Coverage: 183.0
  • Bit_score: 201
  • Evalue 2.00e-49

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Fluviicola_43_260 → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 567
GTGGATAAAAAAGAGAAATTAGATAATATTATTCAGGGTTGTTTGCGCCAGGAGCGGGCAAGCCAGGAAGCATTATTTAAGTTTTTTTATTCAAAAATGCTGACGGTTTGTCTGCGCTATACTTCTGACCGCGATACGGCTCAGGAATTATTGCAGGACGGATTTATTAAGATCTTTGATAAGCTGGAACGATATGAAGATGCAGGCTCGTTTGAAGGCTGGGTGAGAAGAATTATGGTAAATACATGTATAGATCATTACCGTAAATCAAAAAAAGATCCTGTCCTCTACGATGATGATTCGGTTTTCAGAGATGTGGATGATACACTTTCGGGATTTGGAGATGAAGATCTGACCGAGATGAATTCACAGCTGGTGATGAAAGCGATTGCAGAGTTGAGTCCCGCATACCGTACCGTTTTCAACATGTTTGTAATTGAAAATTACTCACATAAAGAAATAGCGGATACACTTGGGATTTCAGAAGGAACTTCCAAATCGAATCTGGCAAAAGCAAAGGCAAATCTCCAGAAAGCACTGAAGGATAAGTTGAAAAAAATGTATTGA
PROTEIN sequence
Length: 189
VDKKEKLDNIIQGCLRQERASQEALFKFFYSKMLTVCLRYTSDRDTAQELLQDGFIKIFDKLERYEDAGSFEGWVRRIMVNTCIDHYRKSKKDPVLYDDDSVFRDVDDTLSGFGDEDLTEMNSQLVMKAIAELSPAYRTVFNMFVIENYSHKEIADTLGISEGTSKSNLAKAKANLQKALKDKLKKMY*