ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.77 Longest contig: 62.94 Kbp Bin length: 51.65 Mbp GC content: 61.28 %

Contigs count: 21073 Features count: 67835 rRNAs count: 15 tRNAs count: 624

Genome completeness

megabin RP 54 / 55 MC: 47 BSCG 45 / 51 MC: 42 ASCG 38 / 38 MC: 38

Displaying items 651-700 of 21073 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_2_scaffold_13291 Order: Halobacteriales (66.67%)	3	1543 bp	73.75	13.74	100.13
qh_2_scaffold_13155 Species: Natronomonas moolapensis (100%)	2	1555 bp	67.20	35.56	100.13
qh_2_scaffold_13159 Species: Halomicrobium mukohataei (50%)	2	1555 bp	73.05	19.55	100.13
qh_2_scaffold_12857 Species: Natronomonas moolapensis (100%)	2	1579 bp	72.58	66.43	100.13
qh_2_scaffold_24148 Species: Salinibacter ruber (100%)	2	1579 bp	70.49	48.45	100.13
qh_2_scaffold_12707 Species: Natronomonas pharaonis (50%)	2	1591 bp	60.59	6.73	100.13
qh_2_scaffold_12265 Species: halophilic archaeon J07HX64 (100%)	2	1627 bp	71.11	13.46	100.12
qh_2_scaffold_2911 Genus: Natronomonas (66.67%)	3	4249 bp	73.50	64.53	100.12
qh_2_scaffold_24617 Species: Halobiforma lacisalsi (50%)	2	1771 bp	69.11	20.05	100.11
qh_2_scaffold_10641 Order: Halobacteriales (100%)	3	1789 bp	66.80	15.37	100.11
qh_2_scaffold_17392 Species: Haloarcula japonica (50%)	2	1864 bp	70.60	10.41	100.11
qh_2_scaffold_9940 Species: Candidatus Halobonum tyrrellensis (50%)	2	1867 bp	50.03	6.37	100.11
qh_2_scaffold_6097 Species: Salinibacter ruber (50%)	2	2832 bp	69.31	16.00	100.11
qh_2_scaffold_20407 Species: Natronomonas pharaonis (75%)	4	1897 bp	72.90	14.07	100.11
qh_2_scaffold_16362	3	1912 bp	58.21	5.39	100.11
qh_2_scaffold_11369 Order: Halobacteriales (75%)	4	4852 bp	64.94	12.47	100.10
qh_2_scaffold_11242 Species: Halococcus salifodinae (100%)	3	2943 bp	67.79	12.16	100.10
qh_2_scaffold_20196 Species: Capsaspora owczarzaki (50%)	2	1984 bp	54.99	6.55	100.10
qh_2_scaffold_8999 Species: Halosimplex carlsbadense (100%)	2	1990 bp	73.77	12.56	100.10
qh_2_scaffold_24027 Species: Natronomonas moolapensis (50%)	2	1010 bp	71.19	24.55	100.10
qh_2_scaffold_23846 Species: halophilic archaeon J07HX64 (100%)	2	1016 bp	66.14	8.46	100.10
qh_2_scaffold_8056 Genus: Haloarcula (50%)	8	3057 bp	67.06	38.67	100.10
qh_2_scaffold_23735 Species: Haloquadratum walsbyi (50%)	2	1019 bp	65.75	10.50	100.10
qh_2_scaffold_23743 Species: halophilic archaeon J07HX64 (50%)	2	1019 bp	68.20	6.97	100.10
qh_2_scaffold_23752 Species: Natronomonas pharaonis (50%)	2	1019 bp	64.08	20.22	100.10
qh_2_scaffold_23631 Species: Halococcus hamelinensis (50%)	2	1022 bp	77.89	12.33	100.10
qh_2_scaffold_23638 Species: Halogeometricum pallidum (50%)	2	1022 bp	67.42	9.39	100.10
qh_2_scaffold_23545 Species: Natronorubrum bangense (100%)	2	1025 bp	47.61	3.51	100.10
qh_2_scaffold_23549 Species: Halococcus salifodinae (66.67%)	3	1025 bp	66.93	14.83	100.10
qh_2_scaffold_23468 Species: Halorubrum sp. AJ67 (50%)	2	1028 bp	67.02	9.05	100.10
qh_2_scaffold_23381 Species: Haladaptatus paucihalophilus (66.67%)	3	1031 bp	63.05	11.54	100.10
qh_2_scaffold_23263 Species: Natronomonas pharaonis (50%)	2	1034 bp	70.41	18.96	100.10
qh_2_scaffold_23278 Species: Halococcus salifodinae (50%)	2	1034 bp	67.12	38.10	100.10
qh_2_scaffold_2511 Species: Haloarcula marismortui (75%)	4	4160 bp	58.73	20.58	100.10
qh_2_scaffold_22567 Species: Natronomonas moolapensis (50%)	2	1058 bp	67.96	36.11	100.10
qh_2_scaffold_22569 Species: Haloferax elongans (50%)	2	1058 bp	58.79	11.15	100.10
qh_2_scaffold_45573 Species: Natronomonas pharaonis (50%)	2	1058 bp	69.75	11.91	100.10
qh_2_scaffold_41308	2	1061 bp	63.62	16.31	100.09
qh_2_scaffold_22304 Species: Opitutaceae bacterium TAV5 (50%)	2	1067 bp	56.51	7.40	100.09
qh_2_scaffold_45796 Species: Halorubrum lacusprofundi (50%)	2	1070 bp	71.68	55.61	100.09
qh_2_scaffold_22229 Species: Haladaptatus paucihalophilus (50%)	2	1070 bp	70.00	7.76	100.09
qh_2_scaffold_22040 Species: Rhodothermus marinus (50%)	2	1076 bp	69.24	10.04	100.09
qh_2_scaffold_21709 Species: Halovivax asiaticus (50%)	2	1088 bp	69.67	8.27	100.09
qh_2_scaffold_21305 Species: Natronomonas pharaonis (50%)	2	1103 bp	74.80	51.13	100.09
qh_2_scaffold_21180 Species: Halococcus salifodinae (50%)	2	1109 bp	61.95	10.28	100.09
qh_2_scaffold_20944 Species: Salinarchaeum sp. Harcht-Bsk1 (50%)	2	1118 bp	66.01	7.33	100.09
qh_2_scaffold_20879 Species: Halobacterium sp. DL1 (50%)	2	1121 bp	76.54	25.96	100.09
qh_2_scaffold_7380 Species: Halococcus saccharolyticus (100%)	2	2245 bp	64.68	15.10	100.09
qh_2_scaffold_20707 Species: Halorubrum lacusprofundi (50%)	2	1127 bp	61.05	7.72	100.09
qh_2_scaffold_20618 Species: Natronomonas pharaonis (50%)	2	1130 bp	63.72	20.18	100.09

Displaying items 651-700 of 21073 in total

QH_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QH_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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