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QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 16951-17000 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_20599
Species: Natronomonas pharaonis (100%)
1 1087 bp 68.63 19.14 42.50
qh_6_scaffold_24117 3 1363 bp 55.10 6.90 42.48
qh_6_scaffold_17155 2 1265 bp 61.58 7.75 42.45
qh_6_scaffold_22262 1 1018 bp 49.80 4.91 42.44
qh_6_scaffold_6856
Class: Halobacteria (50%)
4 3118 bp 50.90 10.39 42.43
qh_6_scaffold_36980
Species: Halobacterium salinarum (100%)
1 1083 bp 41.74 7.39 42.38
qh_6_scaffold_35626
Species: Natronomonas moolapensis (100%)
2 1354 bp 67.36 66.47 42.32
qh_6_scaffold_23635 3 1617 bp 60.67 18.49 42.30
qh_6_scaffold_15592 3 1360 bp 58.38 13.75 42.28
qh_6_scaffold_9930 1 1852 bp 48.16 7.67 42.28
qh_6_scaffold_12961
Species: Halorubrum kocurii (50%)
2 1555 bp 63.09 10.10 42.25
qh_6_scaffold_15016
Species: Halonotius sp. J07HN6 (50%)
2 1400 bp 68.93 13.21 42.21
qh_6_scaffold_10428 1 1798 bp 51.33 6.90 42.21
qh_6_scaffold_6057
Species: Natronobacterium gregoryi (50%)
2 2496 bp 52.84 11.58 42.19
qh_6_scaffold_21322 3 1849 bp 67.06 11.36 42.19
qh_6_scaffold_9914 3 2383 bp 57.74 80.91 42.17
qh_6_scaffold_22612 3 1003 bp 56.93 5.48 42.17
qh_6_scaffold_14308
Species: Salinibacter ruber (50%)
2 2308 bp 53.21 35.88 42.11
qh_6_scaffold_28266
Species: Salinibacter ruber (66.67%)
3 2338 bp 58.25 40.03 42.09
qh_6_scaffold_8844
Species: RBG_13_Chloroflexi_68_17_curated (50%)
2 1996 bp 66.73 26.15 42.08
qh_6_scaffold_18747
Species: halophilic archaeon J07HB67 (50%)
2 1177 bp 65.08 6.71 42.06
qh_6_scaffold_5638 6 7597 bp 52.56 6.74 42.06
qh_6_scaffold_18174 2 1206 bp 60.61 4.56 42.04
qh_6_scaffold_35035
Species: halophilic archaeon J07HX64 (50%)
2 1456 bp 54.60 20.40 42.03
qh_6_scaffold_24118
Class: Halobacteria (66.67%)
3 1851 bp 55.75 8.48 42.03
qh_6_scaffold_12841 3 1566 bp 53.38 39.08 41.95
qh_6_scaffold_20125
Species: Haloarcula californiae (50%)
2 1109 bp 63.12 26.78 41.93
qh_6_scaffold_22638
Species: Halopiger xanaduensis (100%)
1 1002 bp 72.65 14.47 41.92
qh_6_scaffold_9714 3 1880 bp 39.41 4.89 41.91
qh_6_scaffold_12186
Species: Salinibacter ruber (100%)
2 1625 bp 55.94 25.60 41.91
qh_6_scaffold_19052 2 1161 bp 49.18 5.34 41.86
qh_6_scaffold_18978
Species: Halopiger xanaduensis (100%)
1 1663 bp 74.98 10.70 41.85
qh_6_scaffold_20526
Domain: Bacteria (66.67%)
3 1090 bp 57.61 13.67 41.83
qh_6_scaffold_6443 4 2403 bp 53.72 6.16 41.82
qh_6_scaffold_21725
Species: Natronococcus occultus (50%)
2 1817 bp 73.20 69.95 41.77
qh_6_scaffold_16563
Species: Halarchaeum acidiphilum (50%)
2 1300 bp 57.46 15.46 41.77
qh_6_scaffold_16665 1 1294 bp 49.54 5.64 41.73
qh_6_scaffold_25417
Species: Halosimplex carlsbadense (50%)
2 1547 bp 57.85 34.52 41.69
qh_6_scaffold_22005 2 1029 bp 38.97 19.73 41.69
qh_6_scaffold_27532
Species: Candidatus Halobonum tyrrellensis (100%)
2 1389 bp 68.25 10.52 41.68
qh_6_scaffold_6912
Species: Desulfitobacterium metallireducens (50%)
2 2312 bp 47.97 7.40 41.65
qh_6_scaffold_11207 4 3171 bp 57.68 6.78 41.63
qh_6_scaffold_15571
Species: Haloarcula japonica (50%)
2 1968 bp 71.29 36.89 41.62
qh_6_scaffold_31364
Species: halophilic archaeon J07HB67 (50%)
2 1406 bp 64.44 8.39 41.61
qh_6_scaffold_19630 1 1133 bp 57.02 27.18 41.57
qh_6_scaffold_16500 3 1884 bp 56.79 6.05 41.56
qh_6_scaffold_8377 4 2961 bp 51.13 7.87 41.54
qh_6_scaffold_34971
Species: Halovivax ruber (50%)
2 1273 bp 55.85 8.25 41.48
qh_6_scaffold_16146 2 1325 bp 53.74 6.79 41.43
qh_6_scaffold_14032
Species: Natrinema pellirubrum (50%)
2 1470 bp 53.74 16.61 41.43
Displaying items 16951-17000 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.