ggKbase home page
Advanced Search
Search Help

QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 501-550 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_6671
Species: Halococcus saccharolyticus (50%)
2 2358 bp 60.81 32.19 100.13
qh_6_scaffold_12768
Species: Natronomonas pharaonis (100%)
2 1573 bp 72.35 45.39 100.13
qh_6_scaffold_27232
Species: Natronomonas moolapensis (50%)
2 1579 bp 64.53 103.93 100.13
qh_6_scaffold_23370
Species: halophilic archaeon J07HX5 (100%)
2 1621 bp 69.71 9.81 100.12
qh_6_scaffold_12011
Species: Halosimplex carlsbadense (50%)
2 1642 bp 72.23 17.30 100.12
qh_6_scaffold_11825
Species: Halosimplex carlsbadense (100%)
2 1657 bp 71.33 9.72 100.12
qh_6_scaffold_11780
Species: Natronomonas moolapensis (50%)
2 1663 bp 72.70 46.78 100.12
qh_6_scaffold_11782
Species: Halanaeroarchaeum sulfurireducens (100%)
2 1663 bp 71.08 9.20 100.12
qh_6_scaffold_11704
Species: halophilic archaeon J07HX5 (100%)
2 1669 bp 69.62 12.52 100.12
qh_6_scaffold_18652
Species: Halosimplex carlsbadense (100%)
2 1696 bp 73.82 28.77 100.12
qh_6_scaffold_11196
Species: Haloquadratum walsbyi (100%)
2 1720 bp 55.29 5.99 100.12
qh_6_scaffold_11120
Species: halophilic archaeon J07HX64 (50%)
2 2637 bp 67.16 9.63 100.11
qh_6_scaffold_10735 2 1765 bp 66.12 6.57 100.11
qh_6_scaffold_10711
Species: Streptomyces bingchenggensis (50%)
2 1768 bp 53.11 6.45 100.11
qh_6_scaffold_10676
Species: Halorhabdus utahensis (100%)
2 1771 bp 57.43 7.00 100.11
qh_6_scaffold_5442
Species: Haloterrigena thermotolerans (66.67%)
3 2658 bp 62.42 14.30 100.11
qh_6_scaffold_10351 2 1804 bp 47.28 5.76 100.11
qh_6_scaffold_10242
Order: Halobacteriales (66.67%)
3 1816 bp 68.34 25.22 100.11
qh_6_scaffold_10215
Species: Candidatus Halobonum tyrrellensis (100%)
2 1819 bp 68.11 8.85 100.11
qh_6_scaffold_5156 4 2740 bp 64.31 8.72 100.11
qh_6_scaffold_10037
Species: Clostridium sp. NCR (50%)
2 1840 bp 49.62 4.62 100.11
qh_6_scaffold_9839
Species: Candidatus Halobonum tyrrellensis (100%)
2 1864 bp 72.32 17.92 100.11
qh_6_scaffold_9818
Species: Natronomonas pharaonis (100%)
2 1867 bp 69.42 39.21 100.11
qh_6_scaffold_4962
Species: Halosimplex carlsbadense (100%)
2 2802 bp 67.20 28.84 100.11
qh_6_scaffold_20309
Species: Salinibacter ruber (100%)
2 1915 bp 70.18 71.70 100.10
qh_6_scaffold_22172
Species: Haloarcula vallismortis (50%)
2 1930 bp 63.32 13.01 100.10
qh_6_scaffold_9246
Species: Methanobacterium formicicum (50%)
2 1939 bp 40.95 4.95 100.10
qh_6_scaffold_13386
Species: Natronomonas pharaonis (100%)
2 1987 bp 69.15 11.12 100.10
qh_6_scaffold_4440 9 2982 bp 62.51 27.43 100.10
qh_6_scaffold_4442
Species: Halorhabdus utahensis (100%)
2 2982 bp 65.76 13.48 100.10
qh_6_scaffold_22670
Species: Halopiger xanaduensis (50%)
2 1001 bp 66.73 8.39 100.10
qh_6_scaffold_22309
Species: Natronomonas moolapensis (100%)
2 1016 bp 75.49 18.31 100.10
qh_6_scaffold_8582
Species: Candidatus Halobonum tyrrellensis (50%)
2 2032 bp 51.53 12.99 100.10
qh_6_scaffold_4217
Order: Halobacteriales (66.67%)
3 3063 bp 63.57 20.80 100.10
qh_6_scaffold_8352
Species: halophilic archaeon J07HB67 (50%)
2 2065 bp 65.52 34.53 100.10
qh_6_scaffold_8332
Species: Natronomonas pharaonis (50%)
2 2068 bp 75.53 39.56 100.10
qh_6_scaffold_21817
Species: Candidatus Halobonum tyrrellensis (50%)
2 1037 bp 66.35 11.48 100.10
qh_6_scaffold_21822
Species: Natronorubrum bangense (50%)
2 1037 bp 70.49 24.11 100.10
qh_6_scaffold_8217 2 2086 bp 47.08 6.76 100.10
qh_6_scaffold_21691
Species: Natronomonas pharaonis (100%)
2 1043 bp 70.09 42.95 100.10
qh_6_scaffold_21424
Species: Natronomonas pharaonis (50%)
2 1052 bp 68.06 76.71 100.10
qh_6_scaffold_21369 2 1055 bp 63.41 13.46 100.10
qh_6_scaffold_21290
Species: Natrialba hulunbeirensis (50%)
2 1058 bp 68.53 13.89 100.10
qh_6_scaffold_20722
Species: Halosimplex carlsbadense (100%)
2 1082 bp 71.63 12.11 100.09
qh_6_scaffold_12483 2 2176 bp 66.04 11.99 100.09
qh_6_scaffold_7661
Species: Halorubrum saccharovorum (50%)
2 2179 bp 72.37 53.37 100.09
qh_6_scaffold_7542
Species: Crinalium epipsammum (50%)
2 2200 bp 48.36 6.45 100.09
qh_6_scaffold_20269
Species: Caldilinea aerophila (50%)
2 1103 bp 52.04 5.35 100.09
qh_6_scaffold_20060
Species: uncultured archaeon A07HB70 (50%)
2 1112 bp 69.51 8.45 100.09
qh_6_scaffold_7390
Species: Haloferax sp. ATCC BAA-646 (100%)
3 2224 bp 51.89 8.09 100.09
Displaying items 501-550 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.