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QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 701-750 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_11284 3 1712 bp 57.36 5.78 65.71
qh_6_scaffold_19817
Species: Natrinema altunense (50%)
2 1124 bp 69.48 5.78 100.62
qh_6_scaffold_8290 2 2075 bp 56.87 5.78 93.25
qh_6_scaffold_22625 2 1003 bp 48.95 5.78 70.89
qh_6_scaffold_18061
Species: Halorubrum arcis (66.67%)
3 1212 bp 45.96 5.78 95.05
qh_6_scaffold_18086 3 1211 bp 53.92 5.78 59.95
qh_6_scaffold_11637 3 1677 bp 53.19 5.78 52.95
qh_6_scaffold_16947 5 3062 bp 45.72 5.78 98.95
qh_6_scaffold_19988 3 2021 bp 57.05 5.79 78.97
qh_6_scaffold_13371 3 1520 bp 57.50 5.79 59.41
qh_6_scaffold_9389 3 4215 bp 47.88 5.79 62.78
qh_6_scaffold_5796
Order: Natrialbales (60%)
5 4215 bp 50.04 5.79 100.85
qh_6_scaffold_22642
Species: Haloterrigena limicola (50%)
2 1002 bp 61.28 5.79 65.87
qh_6_scaffold_11163
Phylum: Cyanobacteria (60%)
5 3094 bp 44.41 5.79 81.06
qh_6_scaffold_18803
Species: CG_Arma_01 (100%)
1 1174 bp 44.38 5.79 99.66
qh_6_scaffold_12608
Species: Flammeovirgaceae bacterium 311 (50%)
2 1586 bp 52.90 5.80 87.01
qh_6_scaffold_17259 1 1258 bp 63.75 5.80 91.10
qh_6_scaffold_16108
Class: Halobacteria (100%)
3 2053 bp 63.08 5.80 99.95
qh_6_scaffold_13611
Species: Natrinema versiforme (50%)
2 1501 bp 45.30 5.80 89.94
qh_6_scaffold_16388
Species: Halovirus HHTV-2 (66.67%)
3 1310 bp 58.78 5.80 104.89
qh_6_scaffold_19164 3 1156 bp 53.81 5.80 89.27
qh_6_scaffold_11335
Class: Halobacteria (66.67%)
3 1707 bp 46.92 5.80 79.44
qh_6_scaffold_13421 2 1516 bp 54.68 5.80 72.63
qh_6_scaffold_17346 3 2000 bp 50.45 5.80 71.10
qh_6_scaffold_24331
Species: Halorubrum phage GNf2 (50%)
2 1828 bp 53.17 5.80 99.29
qh_6_scaffold_20660
Species: Halovivax asiaticus (50%)
2 1085 bp 51.61 5.81 74.65
qh_6_scaffold_29000
Species: Aphanocapsa montana (50%)
2 1222 bp 61.29 5.81 66.28
qh_6_scaffold_8236
Phylum: Chordata (50%)
4 2083 bp 56.84 5.81 66.54
qh_6_scaffold_9781 3 2529 bp 54.88 5.81 42.94
qh_6_scaffold_11558 5 2667 bp 47.47 5.81 77.73
qh_6_scaffold_13671
Species: Halothece sp. PCC 7418 (100%)
1 1497 bp 59.39 5.81 99.80
qh_6_scaffold_13022
Species: Halococcus thailandensis (50%)
2 1550 bp 63.87 5.81 92.90
qh_6_scaffold_2883 3 4442 bp 52.05 5.81 69.97
qh_6_scaffold_13487 3 2375 bp 55.58 5.81 47.37
qh_6_scaffold_11888 3 1652 bp 63.44 5.81 71.37
qh_6_scaffold_9016
Domain: Bacteria (66.67%)
3 2719 bp 54.80 5.81 61.02
qh_6_scaffold_28194 1 1496 bp 53.61 5.82 18.25
qh_6_scaffold_10365
Species: Scytonema tolypothrichoides (100%)
1 1803 bp 58.68 5.82 88.69
qh_6_scaffold_16595 6 2198 bp 49.55 5.82 72.88
qh_6_scaffold_22354
Species: Halanaeroarchaeum sulfurireducens (50%)
2 1014 bp 46.06 5.82 84.02
qh_6_scaffold_12679
Domain: Archaea (66.67%)
3 1581 bp 50.54 5.82 87.29
qh_6_scaffold_17329 4 1254 bp 44.26 5.82 72.97
qh_6_scaffold_20796
Species: Aureococcus anophagefferens (50%)
2 1769 bp 59.64 5.82 35.44
qh_6_scaffold_6507
Species: uncultured organism (50%)
2 2390 bp 61.13 5.82 97.91
qh_6_scaffold_18554 2 1186 bp 58.09 5.82 30.61
qh_6_scaffold_21089 2 1066 bp 51.88 5.82 69.79
qh_6_scaffold_18597
Species: halophilic archaeon DL31 (100%)
1 1184 bp 49.49 5.83 99.83
qh_6_scaffold_15143
Species: halophilic archaeon J07HB67 (100%)
1 1390 bp 59.50 5.83 99.71
qh_6_scaffold_21601 2 1046 bp 54.40 5.83 54.49
qh_6_scaffold_21613
Species: Haloarcula japonica (50%)
2 1046 bp 52.49 5.83 92.93
Displaying items 701-750 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.