ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %

Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38

Displaying items 17051-17100 of 17572 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_6_scaffold_9839 Species: Candidatus Halobonum tyrrellensis (100%)	2	1864 bp	72.32	17.92	100.11
qh_6_scaffold_10037 Species: Clostridium sp. NCR (50%)	2	1840 bp	49.62	4.62	100.11
qh_6_scaffold_5156	4	2740 bp	64.31	8.72	100.11
qh_6_scaffold_10215 Species: Candidatus Halobonum tyrrellensis (100%)	2	1819 bp	68.11	8.85	100.11
qh_6_scaffold_10242 Order: Halobacteriales (66.67%)	3	1816 bp	68.34	25.22	100.11
qh_6_scaffold_10351	2	1804 bp	47.28	5.76	100.11
qh_6_scaffold_5442 Species: Haloterrigena thermotolerans (66.67%)	3	2658 bp	62.42	14.30	100.11
qh_6_scaffold_10676 Species: Halorhabdus utahensis (100%)	2	1771 bp	57.43	7.00	100.11
qh_6_scaffold_10711 Species: Streptomyces bingchenggensis (50%)	2	1768 bp	53.11	6.45	100.11
qh_6_scaffold_10735	2	1765 bp	66.12	6.57	100.11
qh_6_scaffold_11120 Species: halophilic archaeon J07HX64 (50%)	2	2637 bp	67.16	9.63	100.11
qh_6_scaffold_11196 Species: Haloquadratum walsbyi (100%)	2	1720 bp	55.29	5.99	100.12
qh_6_scaffold_18652 Species: Halosimplex carlsbadense (100%)	2	1696 bp	73.82	28.77	100.12
qh_6_scaffold_11704 Species: halophilic archaeon J07HX5 (100%)	2	1669 bp	69.62	12.52	100.12
qh_6_scaffold_11780 Species: Natronomonas moolapensis (50%)	2	1663 bp	72.70	46.78	100.12
qh_6_scaffold_11782 Species: Halanaeroarchaeum sulfurireducens (100%)	2	1663 bp	71.08	9.20	100.12
qh_6_scaffold_11825 Species: Halosimplex carlsbadense (100%)	2	1657 bp	71.33	9.72	100.12
qh_6_scaffold_12011 Species: Halosimplex carlsbadense (50%)	2	1642 bp	72.23	17.30	100.12
qh_6_scaffold_23370 Species: halophilic archaeon J07HX5 (100%)	2	1621 bp	69.71	9.81	100.12
qh_6_scaffold_27232 Species: Natronomonas moolapensis (50%)	2	1579 bp	64.53	103.93	100.13
qh_6_scaffold_12768 Species: Natronomonas pharaonis (100%)	2	1573 bp	72.35	45.39	100.13
qh_6_scaffold_6671 Species: Halococcus saccharolyticus (50%)	2	2358 bp	60.81	32.19	100.13
qh_6_scaffold_12933 Species: Haloferax mucosum (50%)	2	1558 bp	71.57	22.85	100.13
qh_6_scaffold_6793 Species: Nitratireductor aquibiodomus (50%)	2	2337 bp	62.52	13.78	100.13
qh_6_scaffold_13320 Species: Natronomonas pharaonis (66.67%)	3	1525 bp	69.25	11.93	100.13
qh_6_scaffold_13810 Species: Haloarcula amylolytica (50%)	2	1486 bp	69.99	13.06	100.13
qh_6_scaffold_13923 Species: Halorubrum lacusprofundi (50%)	2	1477 bp	68.38	11.44	100.13
qh_6_scaffold_14081 Species: Halorhabdus tiamatea (50%)	2	1465 bp	53.99	5.60	100.14
qh_6_scaffold_14292 Species: Halorubrum aidingense (50%)	2	1450 bp	66.90	19.03	100.14
qh_6_scaffold_14364 Species: Halorubrum sp. AJ67 (50%)	2	1444 bp	67.87	10.60	100.14
qh_6_scaffold_4727 Species: Halosimplex carlsbadense (100%)	2	2882 bp	64.26	37.61	100.14
qh_6_scaffold_14399 Species: Halorubrum saccharovorum (50%)	2	1441 bp	72.17	33.45	100.14
qh_6_scaffold_8055 Species: Haloarcula vallismortis (50%)	2	2112 bp	69.98	50.57	100.14
qh_6_scaffold_12589 Species: Haloterrigena salina (50%)	2	2079 bp	71.77	86.12	100.14
qh_6_scaffold_15311 Species: Natronomonas pharaonis (66.67%)	3	1378 bp	73.22	68.94	100.15
qh_6_scaffold_15367 Species: Halomicrobium mukohataei (50%)	2	1375 bp	65.31	21.82	100.15
qh_6_scaffold_15372 Species: Halorubrum tebenquichense (50%)	2	1375 bp	72.65	21.24	100.15
qh_6_scaffold_17073 Species: halophilic archaeon J07HX64 (50%)	2	2049 bp	64.86	87.60	100.15
qh_6_scaffold_20383	7	2037 bp	61.51	7.71	100.15
qh_6_scaffold_15928	3	1339 bp	67.96	7.09	100.15
qh_6_scaffold_29104 Species: Natronomonas moolapensis (50%)	2	1998 bp	61.76	23.97	100.15
qh_6_scaffold_16110 Species: Haloferax prahovense (50%)	2	1327 bp	60.66	9.04	100.15
qh_6_scaffold_32413 Species: Streptomyces aurantiacus (50%)	2	1324 bp	67.90	6.57	100.15
qh_6_scaffold_16336 Species: Natronomonas pharaonis (50%)	2	1312 bp	73.02	52.06	100.15
qh_6_scaffold_16348 Order: Halobacteriales (66.67%)	3	1312 bp	67.30	24.92	100.15
qh_6_scaffold_27414 Species: Halorubrum aidingense (50%)	2	1312 bp	56.40	9.15	100.15
qh_6_scaffold_33506 Species: Halogranum salarium (50%)	2	1300 bp	57.62	12.15	100.15
qh_6_scaffold_5703 Phylum: Bacteroidetes (66.67%)	3	2588 bp	58.19	10.97	100.16
qh_6_scaffold_9257 Species: Natronorubrum tibetense (100%)	2	1938 bp	61.76	23.58	100.16
qh_6_scaffold_16810 Species: halophilic archaeon J07HX5 (100%)	2	1285 bp	65.76	9.81	100.16

Displaying items 17051-17100 of 17572 in total

QH_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QH_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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