ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %

Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38

Displaying items 17101-17150 of 17572 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_6_scaffold_9457 Species: Natronolimnobius innermongolicus (50%)	2	1911 bp	75.30	26.32	100.16
qh_6_scaffold_9518 Species: Natronomonas moolapensis (100%)	2	1905 bp	71.29	57.22	100.16
qh_6_scaffold_17125 Species: Haloarcula sinaiiensis (50%)	2	1267 bp	67.64	8.05	100.16
qh_6_scaffold_9625 Species: Halosimplex carlsbadense (100%)	4	1890 bp	69.52	50.21	100.16
qh_6_scaffold_17258 Species: Halosimplex carlsbadense (100%)	2	1258 bp	70.51	8.66	100.16
qh_6_scaffold_17411 Species: halophilic archaeon DL31 (50%)	2	1249 bp	72.06	20.34	100.16
qh_6_scaffold_17470 Species: Halogranum salarium (50%)	2	1246 bp	65.49	11.00	100.16
qh_6_scaffold_17568 Species: Halorhabdus tiamatea (100%)	2	1240 bp	65.73	11.77	100.16
qh_6_scaffold_9872 Species: halophilic archaeon DL31 (50%)	2	1860 bp	69.78	20.32	100.16
qh_6_scaffold_19229 Species: [Cellvibrio] gilvus (50%)	2	1860 bp	68.66	7.26	100.16
qh_6_scaffold_17664 Species: Halogeometricum pallidum (100%)	2	1234 bp	54.21	5.35	100.16
qh_6_scaffold_17720 Species: Halococcus hamelinensis (50%)	2	1231 bp	65.56	10.56	100.16
qh_6_scaffold_17725 Species: Haloarcula californiae (50%)	2	1231 bp	63.04	11.13	100.16
qh_6_scaffold_9994 Species: Natronomonas pharaonis (50%)	2	1845 bp	68.62	43.63	100.16
qh_6_scaffold_17830 Species: Halomicrobium mukohataei (50%)	2	1225 bp	66.69	10.29	100.16
qh_6_scaffold_33874	2	1210 bp	63.64	7.52	100.16
qh_6_scaffold_10246 Genus: Haloarcula (66.67%)	3	1815 bp	69.31	32.34	100.16
qh_6_scaffold_6518 Species: Natronomonas pharaonis (50%)	4	3004 bp	61.92	22.64	100.17
qh_6_scaffold_18325 Species: Halosimplex carlsbadense (100%)	2	1198 bp	64.94	11.69	100.17
qh_6_scaffold_18046 Species: Candidatus Halobonum tyrrellensis (50%)	2	1767 bp	75.16	12.45	100.17
qh_6_scaffold_18739 Species: Haloferax larsenii (50%)	2	1177 bp	73.75	66.19	100.17
qh_6_scaffold_10918 Species: Halosimplex carlsbadense (50%)	2	1746 bp	71.99	11.00	100.17
qh_6_scaffold_19039 Species: Moorea producens (50%)	2	1162 bp	59.64	9.98	100.17
qh_6_scaffold_19090 Species: halophilic archaeon DL31 (50%)	2	1159 bp	74.29	48.23	100.17
qh_6_scaffold_19163 Species: Halococcus thailandensis (100%)	2	1156 bp	48.36	4.67	100.17
qh_6_scaffold_11129 Species: Halosimplex carlsbadense (100%)	2	1725 bp	73.22	24.58	100.17
qh_6_scaffold_36677 Species: halophilic archaeon J07HX5 (100%)	3	1147 bp	71.14	9.24	100.17
qh_6_scaffold_19409	2	1144 bp	50.17	5.86	100.18
qh_6_scaffold_7314 Species: Halorhabdus tiamatea (50%)	2	2237 bp	68.66	30.22	100.18
qh_6_scaffold_7325 Species: Natronomonas moolapensis (100%)	2	2234 bp	67.82	57.43	100.18
qh_6_scaffold_35212 Species: Arthrobacter phenanthrenivorans (50%)	2	1117 bp	67.50	49.78	100.18
qh_6_scaffold_11662 Domain: Bacteria (66.67%)	3	1674 bp	52.93	15.11	100.18
qh_6_scaffold_20480 Species: Halosimplex carlsbadense (100%)	2	1093 bp	70.72	12.08	100.18
qh_6_scaffold_20665 Species: Natronococcus occultus (50%)	2	1084 bp	60.98	6.09	100.18
qh_6_scaffold_20682 Class: Halobacteria (66.67%)	3	1084 bp	61.72	4.80	100.18
qh_6_scaffold_20949 Species: Natronomonas pharaonis (50%)	2	1072 bp	74.91	77.80	100.19
qh_6_scaffold_21014 Species: Haloferax mucosum (50%)	2	1069 bp	66.60	11.79	100.19
qh_6_scaffold_12425 Species: Tannerella forsythia (50%)	2	1602 bp	60.36	16.60	100.19
qh_6_scaffold_21098	3	1066 bp	50.19	5.63	100.19
qh_6_scaffold_21161 Species: Halostagnicola sp. A56 (50%)	2	1063 bp	64.82	51.18	100.19
qh_6_scaffold_21171 Species: Halogranum salarium (50%)	2	1063 bp	74.98	63.69	100.19
qh_6_scaffold_21255 Species: Pelobacter carbinolicus (50%)	2	1060 bp	54.81	7.17	100.19
qh_6_scaffold_21320 Species: Halosimplex carlsbadense (100%)	2	1057 bp	71.52	17.41	100.19
qh_6_scaffold_21381 Species: halophilic archaeon J07HX5 (100%)	2	1054 bp	70.87	10.34	100.19
qh_6_scaffold_12711 Species: halophilic archaeon J07HX5 (100%)	2	1578 bp	70.09	11.66	100.19
qh_6_scaffold_21638 Species: Haloarcula hispanica (50%)	2	1045 bp	72.25	13.97	100.19
qh_6_scaffold_21773 Species: Natronomonas pharaonis (50%)	2	1039 bp	74.78	84.02	100.19
qh_6_scaffold_21784 Species: Haloferax elongans (50%)	2	1039 bp	66.89	23.39	100.19
qh_6_scaffold_5685 Order: Haloferacales (66.67%)	3	2593 bp	68.53	17.01	100.19
qh_6_scaffold_21905 Species: Natronomonas moolapensis (50%)	2	1033 bp	70.28	16.17	100.19

Displaying items 17101-17150 of 17572 in total

QH_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QH_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

Terms of Service

Search Help