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QH_9_UNK

In projects: QH_9  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 22.86 Longest contig: 67.25 Kbp Bin length: 50.11 Mbp GC content: 61.51 %
Contigs count: 22383 Features count: 65940 rRNAs count: 15 tRNAs count: 0

Genome completeness

megabin RP 51 / 55 MC: 48 BSCG 44 / 51 MC: 40 ASCG 38 / 38 MC: 38
Displaying items 21801-21850 of 22383 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_9_scaffold_30492
Species: Halogeometricum borinquense (50%)
2 1754 bp 47.78 4.85 42.59
qh_9_scaffold_13918 2 1547 bp 54.36 4.85 91.53
qh_9_scaffold_12557
Species: halophilic archaeon J07HX5 (100%)
1 1649 bp 49.00 4.85 99.88
qh_9_scaffold_15762
Species: Halomicrobium mukohataei (50%)
2 1423 bp 58.05 4.85 72.94
qh_9_scaffold_23379 1 1092 bp 51.37 4.85 100.00
qh_9_scaffold_7937
Domain: Archaea (50%)
4 2185 bp 35.97 4.85 77.71
qh_9_scaffold_38217 2 1505 bp 55.81 4.85 32.09
qh_9_scaffold_26008
Species: Azospirillum lipoferum (100%)
1 1011 bp 51.24 4.85 100.00
qh_9_scaffold_24511 2 1878 bp 51.76 4.85 31.31
qh_9_scaffold_22801 1 1113 bp 25.07 4.85 51.75
qh_9_scaffold_20086 1 1216 bp 56.25 4.85 98.93
qh_9_scaffold_16881 2 1364 bp 42.60 4.84 64.88
qh_9_scaffold_23300
Species: Haloferax volcanii (50%)
2 1095 bp 55.71 4.84 99.73
qh_9_scaffold_22178 3 1136 bp 50.62 4.84 94.01
qh_9_scaffold_12768
Species: Escherichia phage 121Q (50%)
2 1632 bp 33.64 4.84 100.37
qh_9_scaffold_15093
Order: Natrialbales (66.67%)
3 1468 bp 50.41 4.84 83.79
qh_9_scaffold_23876 3 1075 bp 57.02 4.84 92.65
qh_9_scaffold_10550 1 1837 bp 50.03 4.84 14.04
qh_9_scaffold_21632
Species: Salinibacter ruber (50%)
2 1156 bp 57.87 4.84 37.11
qh_9_scaffold_16073 2 1405 bp 47.90 4.84 92.24
qh_9_scaffold_15409
Species: Haloarcula sinaiiensis (50%)
2 1447 bp 45.13 4.84 52.45
qh_9_scaffold_20500 2 1199 bp 53.04 4.84 52.04
qh_9_scaffold_20527
Species: RBG_16_RIF03_38_10_curated (100%)
1 1198 bp 50.33 4.84 78.13
qh_9_scaffold_29345 1 1610 bp 45.03 4.84 23.85
qh_9_scaffold_25209 2 1033 bp 47.14 4.84 27.59
qh_9_scaffold_21515
Species: Methanoplanus limicola (50%)
2 1159 bp 50.91 4.83 99.14
qh_9_scaffold_23851
Species: Haloferax lucentense (50%)
2 1076 bp 55.67 4.83 64.41
qh_9_scaffold_22644
Species: Dacryopinax sp. DJM-731 SS1 (50%)
2 1119 bp 58.45 4.83 63.81
qh_9_scaffold_25137
Species: Salinibacter ruber (100%)
2 1035 bp 62.61 4.83 82.61
qh_9_scaffold_8002 3 2175 bp 55.17 4.83 53.52
qh_9_scaffold_37165
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1303 bp 56.10 4.83 56.87
qh_9_scaffold_9423
Species: Aphanomyces invadans (50%)
2 1966 bp 55.09 4.83 99.19
qh_9_scaffold_32780 2 1614 bp 53.04 4.83 100.93
qh_9_scaffold_20386 3 1204 bp 41.53 4.82 101.66
qh_9_scaffold_22011 2 1142 bp 53.85 4.82 72.50
qh_9_scaffold_6215 4 2529 bp 51.21 4.82 62.16
qh_9_scaffold_15014 2 1473 bp 55.74 4.82 66.19
qh_9_scaffold_12709
Species: Halococcus thailandensis (50%)
2 1638 bp 48.60 4.82 97.25
qh_9_scaffold_34086 3 1660 bp 45.24 4.82 47.35
qh_9_scaffold_4541
Domain: Bacteria (83.33%)
6 3989 bp 53.72 4.81 92.20
qh_9_scaffold_25005
Species: Natrinema gari (100%)
1 1040 bp 41.83 4.81 99.81
qh_9_scaffold_17114
Species: [Clostridium] leptum (50%)
2 1352 bp 52.22 4.81 67.68
qh_9_scaffold_24339
Species: Nitrosococcus halophilus (50%)
2 1061 bp 48.63 4.81 99.81
qh_9_scaffold_10527 5 3760 bp 49.26 4.81 63.35
qh_9_scaffold_22520 1 1123 bp 35.35 4.81 99.91
qh_9_scaffold_22543 3 1123 bp 58.59 4.81 95.37
qh_9_scaffold_19830
Species: Haloferax mucosum (100%)
1 1226 bp 41.60 4.81 99.84
qh_9_scaffold_16411 7 2270 bp 36.30 4.80 68.46
qh_9_scaffold_18795 2 1270 bp 42.60 4.80 56.93
qh_9_scaffold_18336 2 1291 bp 56.86 4.80 96.44
Displaying items 21801-21850 of 22383 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.