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QH_9_UNK

In projects: QH_9  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 22.86 Longest contig: 67.25 Kbp Bin length: 50.11 Mbp GC content: 61.51 %
Contigs count: 22383 Features count: 65940 rRNAs count: 15 tRNAs count: 0

Genome completeness

megabin RP 51 / 55 MC: 48 BSCG 44 / 51 MC: 40 ASCG 38 / 38 MC: 38
Displaying items 301-350 of 22383 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_9_scaffold_22070
Species: Dictyostelium discoideum (50%)
2 1139 bp 44.07 4.48 77.44
qh_9_scaffold_22079 1 1139 bp 52.24 4.48 45.04
qh_9_scaffold_22089
Order: Bacteroidetes Order II. Incertae sedis (66.67%)
3 1139 bp 61.81 4.48 78.23
qh_9_scaffold_13643 3 2431 bp 39.00 4.48 58.00
qh_9_scaffold_24094
Species: Halococcus hamelinensis (100%)
1 1068 bp 44.85 4.49 100.00
qh_9_scaffold_19849
Species: Legionella oakridgensis (50%)
2 1225 bp 42.37 4.49 95.02
qh_9_scaffold_22248
Species: halophilic archaeon J07HX64 (100%)
1 1133 bp 33.89 4.50 74.67
qh_9_scaffold_26310
Species: Candidatus Nanosalinarum sp. J07AB56 (50%)
2 1001 bp 36.46 4.50 100.10
qh_9_scaffold_25585
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1023 bp 62.17 4.50 94.72
qh_9_scaffold_24495
Species: Haloarcula sinaiiensis (66.67%)
3 1644 bp 37.53 4.50 89.78
qh_9_scaffold_10871 2 1802 bp 37.07 4.50 94.23
qh_9_scaffold_21023 2 1178 bp 54.16 4.50 65.45
qh_9_scaffold_25666
Species: Halococcus salifodinae (50%)
2 1020 bp 58.14 4.51 83.24
qh_9_scaffold_14839
Species: Neospora caninum (100%)
1 1484 bp 58.15 4.51 99.87
qh_9_scaffold_17125
Species: Chelonia mydas (50%)
2 1352 bp 43.57 4.51 91.86
qh_9_scaffold_19438
Species: uncultured archaeon A07HB70 (50%)
2 1242 bp 50.00 4.51 62.56
qh_9_scaffold_25707 3 1019 bp 54.07 4.51 98.92
qh_9_scaffold_16703
Species: Halococcus thailandensis (50%)
2 1374 bp 40.10 4.51 84.50
qh_9_scaffold_16254 3 1396 bp 46.42 4.51 89.40
qh_9_scaffold_15151 2 1464 bp 35.79 4.51 73.36
qh_9_scaffold_11909 3 1706 bp 35.99 4.51 66.82
qh_9_scaffold_12371 4 1664 bp 33.65 4.51 92.67
qh_9_scaffold_20922 1 2018 bp 56.74 4.51 99.90
qh_9_scaffold_8413 2 2108 bp 51.52 4.51 53.51
qh_9_scaffold_24897
Species: Geminocystis sp. NIES-3708 (100%)
1 1043 bp 40.75 4.51 70.47
qh_9_scaffold_21694 3 1153 bp 55.85 4.51 51.78
qh_9_scaffold_23617 2 1084 bp 52.31 4.52 30.72
qh_9_scaffold_7636
Species: Calothrix sp. PCC 7507 (50%)
2 2236 bp 56.53 4.52 94.32
qh_9_scaffold_24338
Species: Haloferax mediterranei (50%)
2 1061 bp 40.90 4.52 88.22
qh_9_scaffold_29691 4 1792 bp 52.29 4.52 54.91
qh_9_scaffold_13303
Species: R_Proteobacteria_53_8 (50%)
2 1592 bp 51.95 4.52 91.02
qh_9_scaffold_20071 1 1216 bp 49.84 4.52 18.75
qh_9_scaffold_32892
Species: Aciduliprofundum sp. MAR08-339 (50%)
2 1635 bp 46.36 4.53 102.94
qh_9_scaffold_6083
Species: Schizophyllum commune (50%)
2 2560 bp 49.02 4.53 98.09
qh_9_scaffold_32033 3 1588 bp 55.29 4.53 90.11
qh_9_scaffold_23710 1 1081 bp 55.78 4.53 99.91
qh_9_scaffold_10809 3 1809 bp 57.05 4.53 75.79
qh_9_scaffold_10379
Species: Tetrahymena thermophila (100%)
1 1854 bp 54.64 4.53 99.84
qh_9_scaffold_21867 2 1147 bp 48.39 4.53 89.71
qh_9_scaffold_19602 2 1235 bp 32.71 4.53 62.19
qh_9_scaffold_13645 2 1566 bp 54.41 4.53 99.81
qh_9_scaffold_25140
Species: Tetranychus urticae (100%)
1 1035 bp 58.55 4.54 100.00
qh_9_scaffold_18652 1 1277 bp 52.55 4.54 99.84
qh_9_scaffold_20758
Species: halophilic archaeon DL31 (100%)
2 1189 bp 51.39 4.54 100.17
qh_9_scaffold_10420 3 1849 bp 40.94 4.54 90.54
qh_9_scaffold_11073 2 1784 bp 54.04 4.54 83.41
qh_9_scaffold_17803 3 1318 bp 55.08 4.55 89.91
qh_9_scaffold_25250
Species: Natronomonas pharaonis (50%)
2 1032 bp 50.97 4.55 82.27
qh_9_scaffold_11356 2 1757 bp 42.86 4.55 91.01
qh_9_scaffold_17405
Domain: Bacteria (100%)
3 2042 bp 60.33 4.55 75.07
Displaying items 301-350 of 22383 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.