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QH_10_UNK

In projects: QH_10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.81 Longest contig: 99.48 Kbp Bin length: 62.59 Mbp GC content: 61.29 %
Contigs count: 23910 Features count: 79125 rRNAs count: 20 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 49 / 51 MC: 47 ASCG 38 / 38 MC: 38
Displaying items 23601-23650 of 23910 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_10_scaffold_30120
Species: Oscillatoria nigro-viridis (50%)
2 1878 bp 39.03 22.58 45.37
qh_10_scaffold_19894 1 1376 bp 39.03 4.72 99.85
qh_10_scaffold_25797 2 1110 bp 39.01 3.78 94.59
qh_10_scaffold_28843
Species: Natronococcus jeotgali (50%)
2 2000 bp 39.00 5.40 73.35
qh_10_scaffold_22273
Species: Coleofasciculus chthonoplastes (50%)
2 1258 bp 38.95 8.59 60.81
qh_10_scaffold_19858
Species: uncultured archaeon A07HR67 (50%)
2 1379 bp 38.94 4.28 82.89
qh_10_scaffold_19049
Class: Oscillatoriophycideae (50%)
4 1426 bp 38.92 48.18 91.94
qh_10_scaffold_10012 2 2267 bp 38.91 38.91 61.40
qh_10_scaffold_20523 3 1344 bp 38.91 8.41 58.04
qh_10_scaffold_18188
Species: R_Elusimicrobia_39_32 (50%)
2 1480 bp 38.85 6.55 50.47
qh_10_scaffold_292
Class: Oscillatoriophycideae (50%)
12 15798 bp 38.85 18.37 91.28
qh_10_scaffold_15007
Domain: Bacteria (66.67%)
3 2512 bp 38.85 5.33 88.02
qh_10_scaffold_18001 1 1493 bp 38.85 4.55 94.64
qh_10_scaffold_7057
Order: Oscillatoriales (50%)
4 2835 bp 38.80 40.74 87.72
qh_10_scaffold_28778
Species: Nostoc sp. PCC 7120 (50%)
2 1549 bp 38.80 6.71 77.28
qh_10_scaffold_20452
Species: Halomonas boliviensis (50%)
2 1348 bp 38.80 6.75 75.67
qh_10_scaffold_17875
Domain: Bacteria (66.67%)
3 1501 bp 38.77 4.33 97.34
qh_10_scaffold_2068
Species: marine sediment metagenome (100%)
1 5977 bp 38.77 14.71 91.35
qh_10_scaffold_25273 2 1130 bp 38.76 12.30 46.73
qh_10_scaffold_28466
Species: Halopiger xanaduensis (100%)
1 1022 bp 38.75 4.21 99.80
qh_10_scaffold_25031 3 1139 bp 38.72 3.42 95.61
qh_10_scaffold_27338
Species: Halogeometricum borinquense (50%)
2 1057 bp 38.69 3.69 95.08
qh_10_scaffold_6710 8 5088 bp 38.64 25.94 94.58
qh_10_scaffold_22016 5 1798 bp 38.60 5.84 90.93
qh_10_scaffold_26389
Species: Beggiatoa sp. PS (100%)
1 1088 bp 38.60 5.88 65.63
qh_10_scaffold_22375 2 1254 bp 38.60 3.91 48.09
qh_10_scaffold_20782 4 3141 bp 38.59 36.62 48.42
qh_10_scaffold_23992 2 1751 bp 38.55 5.31 73.16
qh_10_scaffold_3766 6 4042 bp 38.55 17.72 49.06
qh_10_scaffold_22791
Species: Haloquadratum sp. J07HQX50 (50%)
2 1235 bp 38.54 3.97 100.08
qh_10_scaffold_20875
Species: RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated (50%)
2 1326 bp 38.54 4.00 99.32
qh_10_scaffold_31910 3 1514 bp 38.51 4.23 74.50
qh_10_scaffold_29180
Species: RIFOXYD12_FULL_Rhodospirillales_60_8_curated (50%)
2 1000 bp 38.50 3.80 75.00
qh_10_scaffold_26691
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
2 1078 bp 38.50 3.71 99.35
qh_10_scaffold_24565 2 1156 bp 38.49 3.63 46.19
qh_10_scaffold_8828
Order: Chroococcales (66.67%)
3 2468 bp 38.49 44.73 57.62
qh_10_scaffold_13361
Species: Lyngbya sp. PCC 8106 (66.67%)
3 1858 bp 38.48 14.32 88.81
qh_10_scaffold_17223
Species: Moorea producens (50%)
2 1543 bp 38.43 36.29 73.10
qh_10_scaffold_6783 3 2905 bp 38.42 9.09 98.52
qh_10_scaffold_14998
Species: Cyanothece sp. CCY0110 (50%)
2 1711 bp 38.40 16.27 47.34
qh_10_scaffold_11349 2 2080 bp 38.37 7.26 62.16
qh_10_scaffold_20199
Species: Halococcus salifodinae (50%)
2 1361 bp 38.35 3.82 84.86
qh_10_scaffold_19669
Species: Scytonema tolypothrichoides (100%)
1 1389 bp 38.30 4.10 99.78
qh_10_scaffold_20680
Species: Haloquadratum walsbyi (50%)
2 1337 bp 38.29 4.94 77.41
qh_10_scaffold_7553
Phylum: Cyanobacteria (62.5%)
8 6110 bp 38.28 31.24 89.71
qh_10_scaffold_17678
Order: Haloferacales (50%)
4 1513 bp 38.27 4.56 86.85
qh_10_scaffold_17517
Genus: Arthrospira (66.67%)
3 2527 bp 38.27 6.02 71.82
qh_10_scaffold_9223
Species: Alkaliphilus metalliredigens (50%)
2 2400 bp 38.25 5.46 71.25
qh_10_scaffold_14341
Domain: Bacteria (50%)
4 1762 bp 38.25 10.33 98.58
qh_10_scaffold_7152
Class: Oscillatoriophycideae (66.67%)
3 2813 bp 38.25 8.89 94.81
Displaying items 23601-23650 of 23910 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.