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QH_10_UNK

In projects: QH_10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.81 Longest contig: 99.48 Kbp Bin length: 62.59 Mbp GC content: 61.29 %
Contigs count: 23910 Features count: 79125 rRNAs count: 20 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 49 / 51 MC: 47 ASCG 38 / 38 MC: 38
Displaying items 23651-23700 of 23910 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_10_scaffold_13085
Species: Salinibacter_ruber (50%)
4 1886 bp 38.23 6.04 71.26
qh_10_scaffold_15706
Species: Haloquadratum walsbyi (100%)
1 1654 bp 38.21 4.23 99.94
qh_10_scaffold_28345
Species: Natronococcus amylolyticus (50%)
2 1026 bp 38.21 4.09 97.95
qh_10_scaffold_22406 3 1252 bp 38.18 3.83 70.21
qh_10_scaffold_22411
Species: Candidatus Nanosalina sp. J07AB43 (100%)
1 1252 bp 38.18 4.07 99.92
qh_10_scaffold_26120 3 1098 bp 38.16 4.37 88.52
qh_10_scaffold_23957
Species: Halococcus morrhuae (50%)
2 1182 bp 38.16 11.51 77.66
qh_10_scaffold_24084 4 1177 bp 38.15 5.10 93.03
qh_10_scaffold_25416
Species: Candidatus Haloredivivus sp. G17 (50%)
2 1125 bp 38.13 3.82 82.13
qh_10_scaffold_23699 4 1194 bp 38.11 4.69 93.72
qh_10_scaffold_19319 2 1410 bp 38.09 15.82 80.00
qh_10_scaffold_23602 3 1198 bp 38.06 4.76 82.89
qh_10_scaffold_25793 3 1587 bp 38.06 20.92 46.50
qh_10_scaffold_22472 2 1250 bp 38.00 42.72 62.88
qh_10_scaffold_25868 3 1108 bp 38.00 4.87 84.75
qh_10_scaffold_22291 3 1257 bp 37.95 4.69 48.45
qh_10_scaffold_22960
Species: Candidatus Nanosalinarum sp. J07AB56 (50%)
2 1228 bp 37.95 4.48 78.42
qh_10_scaffold_19314 3 1410 bp 37.94 3.62 57.45
qh_10_scaffold_26920 1 1070 bp 37.94 2.99 99.81
qh_10_scaffold_21965
Species: RHI_OP11_Gottemanbacteria_40_13 (50%)
2 1273 bp 37.94 4.56 97.80
qh_10_scaffold_25911 6 2905 bp 37.93 54.70 63.72
qh_10_scaffold_7419 5 2749 bp 37.90 6.91 45.83
qh_10_scaffold_29175
Species: marine sediment metagenome (50%)
2 1000 bp 37.90 4.20 90.00
qh_10_scaffold_26343
Species: Nitrosococcus halophilus (50%)
2 1090 bp 37.89 5.60 80.09
qh_10_scaffold_19403
Species: RIFOXYA2_FULL_Elusimicrobia_40_6_curated (100%)
1 1404 bp 37.89 6.20 41.03
qh_10_scaffold_37686 1 1341 bp 37.88 3.88 68.90
qh_10_scaffold_18466
Species: Pseudomonas sp. 12M76_air (50%)
2 1462 bp 37.76 4.04 84.75
qh_10_scaffold_26969
Phylum: Cyanobacteria (60%)
5 1746 bp 37.74 46.39 51.89
qh_10_scaffold_19630
Species: Oscillatoria nigro-viridis (50%)
2 1391 bp 37.74 19.12 56.29
qh_10_scaffold_27474 2 1052 bp 37.74 8.46 17.68
qh_10_scaffold_26062
Species: Pleurocapsa minor (100%)
1 1100 bp 37.73 39.73 25.09
qh_10_scaffold_14035
Species: [Oscillatoria] sp. PCC 6506 (100%)
1 1789 bp 37.73 33.43 21.97
qh_10_scaffold_25480
Species: RHI_SM2F11_48_16 (100%)
3 1955 bp 37.70 3.94 100.21
qh_10_scaffold_9115 6 2420 bp 37.69 3.97 79.46
qh_10_scaffold_13140 4 1881 bp 37.69 5.74 100.48
qh_10_scaffold_27269 2 1059 bp 37.68 4.34 89.52
qh_10_scaffold_3350 5 4272 bp 37.66 14.35 90.38
qh_10_scaffold_27053
Species: Caldanaerobacter subterraneus (100%)
1 1065 bp 37.65 4.79 91.55
qh_10_scaffold_25860 1 1108 bp 37.64 66.25 13.00
qh_10_scaffold_21422 2 1298 bp 37.60 8.17 100.31
qh_10_scaffold_2815 11 6922 bp 37.59 9.27 91.01
qh_10_scaffold_18805
Class: Halobacteria (66.67%)
3 1443 bp 37.56 4.71 80.25
qh_10_scaffold_5473
Phylum: Cyanobacteria (50%)
4 3290 bp 37.54 7.17 96.66
qh_10_scaffold_27097
Species: Fusobacterium sp. OBRC1 (50%)
2 1064 bp 37.50 5.55 102.07
qh_10_scaffold_6966
Species: Terriglobus roseus (50%)
2 3693 bp 37.48 93.18 94.80
qh_10_scaffold_16034
Species: AR9 (50%)
2 1628 bp 37.47 4.98 100.25
qh_10_scaffold_3771 7 4867 bp 37.42 23.53 89.81
qh_10_scaffold_19973
Species: Chloroflexus aggregans (50%)
2 1372 bp 37.32 4.52 91.18
qh_10_scaffold_27730
Domain: Bacteria (100%)
3 1044 bp 37.26 5.17 91.38
qh_10_scaffold_18775 3 1444 bp 37.26 4.29 70.64
Displaying items 23651-23700 of 23910 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.