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QH_10_UNK

In projects: QH_10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.81 Longest contig: 99.48 Kbp Bin length: 62.59 Mbp GC content: 61.29 %
Contigs count: 23910 Features count: 79125 rRNAs count: 20 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 49 / 51 MC: 47 ASCG 38 / 38 MC: 38
Displaying items 51-100 of 23910 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_10_scaffold_40825 4 2102 bp 35.30 3.71 51.81
qh_10_scaffold_26691
Species: RBG_13_Euryarchaeota_31_8_curated (50%)
2 1078 bp 38.50 3.71 99.35
qh_10_scaffold_10241 3 2231 bp 34.02 3.72 85.79
qh_10_scaffold_26815
Species: Halogeometricum pallidum (100%)
1 1074 bp 34.64 3.72 79.89
qh_10_scaffold_23337 2 1211 bp 45.17 3.72 63.17
qh_10_scaffold_18331 1 1470 bp 35.03 3.74 99.80
qh_10_scaffold_18325
Species: R_OD1_Giovannonibacteria_46_13 (50%)
2 1471 bp 49.90 3.74 98.71
qh_10_scaffold_21828 2 1279 bp 43.47 3.75 74.59
qh_10_scaffold_21258
Species: Natrialba taiwanensis (100%)
2 1306 bp 46.86 3.75 97.86
qh_10_scaffold_28166 2 1031 bp 42.68 3.78 98.35
qh_10_scaffold_28960
Species: Haloquadratum walsbyi (50%)
2 1006 bp 39.26 3.78 84.39
qh_10_scaffold_25797 2 1110 bp 39.01 3.78 94.59
qh_10_scaffold_23815
Species: Caulobacter phage Cr30 (50%)
2 1188 bp 34.68 3.79 94.19
qh_10_scaffold_32766
Species: marine sediment metagenome (50%)
2 1530 bp 33.73 3.79 90.00
qh_10_scaffold_28403 1 1025 bp 55.51 3.80 99.80
qh_10_scaffold_29180
Species: RIFOXYD12_FULL_Rhodospirillales_60_8_curated (50%)
2 1000 bp 38.50 3.80 75.00
qh_10_scaffold_15847 3 2936 bp 39.58 3.81 56.51
qh_10_scaffold_23422 3 1207 bp 30.16 3.81 93.70
qh_10_scaffold_25416
Species: Candidatus Haloredivivus sp. G17 (50%)
2 1125 bp 38.13 3.82 82.13
qh_10_scaffold_28522 2 1021 bp 43.88 3.82 38.20
qh_10_scaffold_20199
Species: Halococcus salifodinae (50%)
2 1361 bp 38.35 3.82 84.86
qh_10_scaffold_22406 3 1252 bp 38.18 3.83 70.21
qh_10_scaffold_23105 2 1221 bp 56.35 3.85 95.58
qh_10_scaffold_17338 3 1534 bp 47.59 3.85 53.98
qh_10_scaffold_17363
Species: Dehalococcoides mccartyi (50%)
2 1533 bp 45.99 3.85 89.04
qh_10_scaffold_28885 2 1009 bp 41.72 3.87 98.12
qh_10_scaffold_23826
Order: Halobacteriales (66.67%)
3 1188 bp 40.24 3.87 83.59
qh_10_scaffold_27142 3 1654 bp 34.76 3.87 92.32
qh_10_scaffold_37686 1 1341 bp 37.88 3.88 68.90
qh_10_scaffold_26566
Species: R_OD1_Magasanikbacteria_47_14 (50%)
2 1082 bp 43.25 3.88 85.95
qh_10_scaffold_27444
Species: Scytonema millei (50%)
2 1053 bp 58.69 3.89 49.86
qh_10_scaffold_17767
Species: Singulisphaera acidiphila (50%)
2 1508 bp 52.59 3.91 79.58
qh_10_scaffold_22375 2 1254 bp 38.60 3.91 48.09
qh_10_scaffold_26890
Species: Ktedonobacter racemifer (100%)
1 1071 bp 56.21 3.92 99.72
qh_10_scaffold_14656
Domain: Bacteria (66.67%)
3 1735 bp 25.36 3.92 63.63
qh_10_scaffold_28644
Species: Cylindrospermopsis raciborskii (100%)
2 1017 bp 33.82 3.93 85.25
qh_10_scaffold_23125 3 1220 bp 40.16 3.93 68.85
qh_10_scaffold_25480
Species: RHI_SM2F11_48_16 (100%)
3 1955 bp 37.70 3.94 100.21
qh_10_scaffold_13907 3 1800 bp 36.89 3.94 81.17
qh_10_scaffold_22479
Order: Natrialbales (66.67%)
3 1875 bp 49.17 3.95 71.04
qh_10_scaffold_27799
Species: GWA2_OD1_42_32 (50%)
2 1742 bp 41.96 3.96 55.80
qh_10_scaffold_24454 1 1161 bp 58.31 3.96 99.74
qh_10_scaffold_22791
Species: Haloquadratum sp. J07HQX50 (50%)
2 1235 bp 38.54 3.97 100.08
qh_10_scaffold_9115 6 2420 bp 37.69 3.97 79.46
qh_10_scaffold_25859
Species: Dyadobacter fermentans (100%)
1 1108 bp 52.35 3.97 65.25
qh_10_scaffold_17301
Species: Arcticibacter svalbardensis (50%)
2 1537 bp 56.60 3.97 96.03
qh_10_scaffold_24560
Species: RBG_13_Bacteroidetes_42_15_curated (50%)
2 1157 bp 40.45 3.98 100.35
qh_10_scaffold_27389
Species: Halorubrum litoreum (50%)
2 1055 bp 44.64 3.98 99.53
qh_10_scaffold_12844
Species: uncultured bacterium (50%)
2 1911 bp 35.85 3.98 98.43
qh_10_scaffold_19424
Species: uncultured bacterium (50%)
2 1403 bp 30.29 3.99 94.08
Displaying items 51-100 of 23910 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.