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QS_2_UNK

In projects: QS_2  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 27.84 Longest contig: 286.04 Kbp Bin length: 41.26 Mbp GC content: 59.97 %
Contigs count: 14256 Features count: 54073 rRNAs count: 12 tRNAs count: 473

Genome completeness

megabin RP 47 / 55 MC: 37 BSCG 45 / 51 MC: 38 ASCG 38 / 38 MC: 38
Displaying items 551-600 of 14256 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_2_scaffold_1902 11 10191 bp 52.58 6.72 73.86
qs_2_scaffold_6331 11 2330 bp 60.34 10.39 99.61
qs_2_scaffold_4261 11 5795 bp 56.03 7.09 76.46
qs_2_scaffold_292
Order: Halobacteriales (63.64%)
11 17033 bp 53.48 12.77 90.67
qs_2_scaffold_1364
Class: Halobacteria (63.64%)
11 11961 bp 61.40 8.60 83.90
qs_2_scaffold_1157 11 7284 bp 49.55 7.65 56.67
qs_2_scaffold_1180 11 12792 bp 57.25 7.04 75.26
qs_2_scaffold_1641 11 6392 bp 55.33 7.51 65.47
qs_2_scaffold_2431 11 4530 bp 44.92 6.51 67.75
qs_2_scaffold_681
Class: Halobacteria (63.64%)
11 11970 bp 53.98 24.01 83.23
qs_2_scaffold_704 11 9582 bp 56.55 7.11 63.02
qs_2_scaffold_1296
Domain: Bacteria (81.82%)
11 6731 bp 65.04 23.83 82.86
qs_2_scaffold_1796
Class: Halobacteria (72.73%)
11 9105 bp 62.71 63.05 81.71
qs_2_scaffold_2152 11 5344 bp 57.63 47.25 65.79
qs_2_scaffold_6121 11 6929 bp 55.36 6.97 68.80
qs_2_scaffold_5434
Order: Halobacteriales (54.55%)
11 3501 bp 65.95 13.80 100.86
qs_2_scaffold_2030 11 7704 bp 55.49 7.17 83.61
qs_2_scaffold_636
Class: Halobacteria (63.64%)
11 12551 bp 56.82 43.80 85.02
qs_2_scaffold_1597 11 5917 bp 60.96 8.89 87.97
qs_2_scaffold_315
Domain: Bacteria (72.73%)
11 15487 bp 63.90 19.92 79.48
qs_2_scaffold_2444
Class: Halobacteria (63.64%)
11 6396 bp 55.25 14.45 77.39
qs_2_scaffold_2445 11 4521 bp 58.33 7.61 94.56
qs_2_scaffold_4297
Domain: Bacteria (90.91%)
11 5953 bp 63.09 14.48 71.71
qs_2_scaffold_5681
Genus: Halococcus (54.55%)
11 5535 bp 56.73 45.65 68.78
qs_2_scaffold_1736 11 6749 bp 54.35 6.89 82.06
qs_2_scaffold_1644
Class: Halobacteria (72.73%)
11 7926 bp 51.44 11.83 78.88
qs_2_scaffold_2769
Class: Halobacteria (63.64%)
11 8452 bp 59.09 49.35 73.51
qs_2_scaffold_431
Class: Halobacteria (63.64%)
11 12830 bp 65.07 59.66 89.49
qs_2_scaffold_4083 11 5320 bp 63.65 7.44 90.51
qs_2_scaffold_1438 11 6285 bp 58.09 18.54 70.41
qs_2_scaffold_2777
Class: Halobacteria (63.64%)
11 6393 bp 55.06 24.25 65.70
qs_2_scaffold_1669 11 8941 bp 64.91 20.34 78.18
qs_2_scaffold_1670 11 9644 bp 54.01 7.04 64.42
qs_2_scaffold_825 11 8854 bp 54.48 11.79 79.52
qs_2_scaffold_2058 11 12727 bp 55.13 7.20 52.68
qs_2_scaffold_3646
Class: Halobacteria (63.64%)
11 8544 bp 60.11 81.55 91.96
qs_2_scaffold_4340
Genus: Halococcus (50%)
10 8309 bp 61.90 26.92 75.79
qs_2_scaffold_872
Phylum: Bacteroidetes (60%)
10 8572 bp 55.93 8.47 93.27
qs_2_scaffold_2322 10 10872 bp 56.03 6.52 78.04
qs_2_scaffold_6647 10 4042 bp 60.86 14.07 79.81
qs_2_scaffold_3201 10 5192 bp 55.93 7.45 66.16
qs_2_scaffold_343
Genus: Halococcus (60%)
10 14750 bp 63.29 22.75 45.70
qs_2_scaffold_2808 10 8170 bp 52.28 12.56 79.17
qs_2_scaffold_3211
Order: Haloferacales (50%)
10 7231 bp 56.67 25.82 75.51
qs_2_scaffold_1097
Species: Haladaptatus paucihalophilus (60%)
10 10505 bp 66.15 32.26 91.33
qs_2_scaffold_367
Species: Salinibacter ruber (60%)
10 15009 bp 61.78 17.78 79.09
qs_2_scaffold_782 10 10271 bp 52.69 7.32 67.03
qs_2_scaffold_3218 10 9810 bp 55.77 6.96 76.42
qs_2_scaffold_3904
Class: Halobacteria (70%)
10 8396 bp 61.05 29.64 73.93
qs_2_scaffold_958 10 8078 bp 55.50 7.80 69.78
Displaying items 551-600 of 14256 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.