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QS_2_UNK

In projects: QS_2  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 27.84 Longest contig: 286.04 Kbp Bin length: 41.26 Mbp GC content: 59.97 %
Contigs count: 14256 Features count: 54073 rRNAs count: 12 tRNAs count: 473

Genome completeness

megabin RP 47 / 55 MC: 37 BSCG 45 / 51 MC: 38 ASCG 38 / 38 MC: 38
Displaying items 601-650 of 14256 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_2_scaffold_1351
Class: Halobacteria (60%)
10 6528 bp 60.62 49.05 81.85
qs_2_scaffold_1167 10 7987 bp 48.65 19.24 86.92
qs_2_scaffold_3225
Class: Halobacteria (60%)
10 7057 bp 64.50 15.36 93.10
qs_2_scaffold_737
Domain: Bacteria (80%)
10 16029 bp 62.90 20.09 85.70
qs_2_scaffold_2499 10 6443 bp 55.58 7.78 70.73
qs_2_scaffold_691
Species: Halococcus salifodinae (60%)
10 9677 bp 69.04 50.71 95.11
qs_2_scaffold_599
Order: Halobacteriales (70%)
10 10587 bp 53.72 12.95 90.00
qs_2_scaffold_3455 10 8325 bp 50.14 17.92 75.68
qs_2_scaffold_2210 10 6442 bp 57.06 6.64 76.79
qs_2_scaffold_1847 10 9215 bp 45.02 13.22 67.42
qs_2_scaffold_6224
Class: Halobacteria (50%)
10 7717 bp 68.64 69.57 70.75
qs_2_scaffold_2503
Genus: Halococcus (70%)
10 8634 bp 58.19 34.45 85.79
qs_2_scaffold_1963
Class: Halobacteria (60%)
10 8872 bp 55.04 27.61 74.32
qs_2_scaffold_600
Class: Halobacteria (50%)
10 14169 bp 57.63 19.82 86.43
qs_2_scaffold_2661
Order: Halobacteriales (50%)
10 6149 bp 58.19 8.23 77.57
qs_2_scaffold_3240 10 6242 bp 55.64 7.39 73.29
qs_2_scaffold_2354
Order: Halobacteriales (60%)
10 11204 bp 55.86 40.69 86.19
qs_2_scaffold_877
Domain: Bacteria (80%)
10 8540 bp 63.37 23.22 73.49
qs_2_scaffold_808
Order: Halobacteriales (50%)
10 8944 bp 58.40 14.93 82.88
qs_2_scaffold_3933
Order: Halobacteriales (50%)
10 10482 bp 56.28 7.01 80.11
qs_2_scaffold_10549
Class: Halobacteria (70%)
10 3750 bp 62.35 23.92 71.36
qs_2_scaffold_6936
Order: Halobacteriales (50%)
10 7107 bp 68.36 59.25 71.46
qs_2_scaffold_1585 10 7661 bp 54.48 7.11 69.35
qs_2_scaffold_1032 10 7760 bp 56.25 7.28 73.11
qs_2_scaffold_2674
Order: Halobacteriales (50%)
10 14906 bp 68.93 14.45 88.84
qs_2_scaffold_1355
Class: Halobacteria (80%)
10 9099 bp 52.53 24.71 75.17
qs_2_scaffold_3485 10 7936 bp 56.65 6.98 74.55
qs_2_scaffold_1752 10 11051 bp 55.19 7.01 77.88
qs_2_scaffold_487 10 13214 bp 54.22 7.23 63.05
qs_2_scaffold_1056
Class: Halobacteria (50%)
10 12121 bp 48.13 9.80 68.86
qs_2_scaffold_1609 10 8742 bp 54.21 6.77 69.77
qs_2_scaffold_1540
Species: Halococcus salifodinae (50%)
10 6048 bp 59.52 38.71 80.11
qs_2_scaffold_3050
Class: Halobacteria (70%)
10 8678 bp 61.98 37.66 84.21
qs_2_scaffold_4647 10 2934 bp 53.61 7.06 80.78
qs_2_scaffold_1333 10 7532 bp 54.62 6.60 78.07
qs_2_scaffold_1264
Domain: Bacteria (50%)
10 9017 bp 63.38 25.33 85.61
qs_2_scaffold_4188
Order: Halobacteriales (70%)
10 5029 bp 57.67 48.72 76.60
qs_2_scaffold_3728
Order: Halobacteriales (60%)
10 9539 bp 62.40 13.84 73.91
qs_2_scaffold_442
Species: Salinibacter ruber (60%)
10 12698 bp 64.25 13.20 93.79
qs_2_scaffold_2867 10 5150 bp 61.86 8.99 71.65
qs_2_scaffold_1984
Genus: Halococcus (70%)
10 6858 bp 61.20 66.23 77.47
qs_2_scaffold_1011 10 13732 bp 53.65 7.64 76.84
qs_2_scaffold_1495 10 6165 bp 51.65 8.55 95.57
qs_2_scaffold_8948 10 4955 bp 65.83 115.08 71.97
qs_2_scaffold_1288 10 7441 bp 49.82 34.79 65.19
qs_2_scaffold_1127 10 15859 bp 56.43 7.79 43.49
qs_2_scaffold_1565
Class: Halobacteria (60%)
10 5994 bp 53.47 14.63 71.32
qs_2_scaffold_3741 10 4282 bp 51.66 9.08 67.12
qs_2_scaffold_1427 10 6323 bp 53.87 6.99 81.46
qs_2_scaffold_1381
Class: Halobacteria (50%)
10 7499 bp 61.05 49.63 62.30
Displaying items 601-650 of 14256 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.