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QS_2_UNK

In projects: QS_2  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 27.84 Longest contig: 286.04 Kbp Bin length: 41.26 Mbp GC content: 59.97 %
Contigs count: 14256 Features count: 54073 rRNAs count: 12 tRNAs count: 473

Genome completeness

megabin RP 47 / 55 MC: 37 BSCG 45 / 51 MC: 38 ASCG 38 / 38 MC: 38
Displaying items 201-250 of 14256 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_2_scaffold_736
Class: Halobacteria (62.5%)
16 9352 bp 60.74 11.66 82.54
qs_2_scaffold_988
Class: Halobacteria (62.5%)
16 17180 bp 66.19 54.33 91.01
qs_2_scaffold_345
Order: Natrialbales (56.25%)
16 14730 bp 66.50 39.25 90.35
qs_2_scaffold_284
Order: Halobacteriales (62.5%)
16 18651 bp 60.96 12.29 78.64
qs_2_scaffold_463
Class: Halobacteria (81.25%)
16 13489 bp 61.02 101.17 88.65
qs_2_scaffold_440
Order: Halobacteriales (68.75%)
16 16870 bp 59.76 56.17 85.23
qs_2_scaffold_3045 16 12037 bp 55.73 7.30 77.19
qs_2_scaffold_649
Phylum: Euryarchaeota (50%)
16 10851 bp 55.27 19.01 73.46
qs_2_scaffold_353
Domain: Bacteria (68.75%)
16 17679 bp 57.79 16.69 69.51
qs_2_scaffold_2552 16 7160 bp 61.58 8.39 85.73
qs_2_scaffold_1015
Class: Halobacteria (62.5%)
16 8465 bp 68.02 69.83 73.27
qs_2_scaffold_654 16 13974 bp 52.92 7.02 68.83
qs_2_scaffold_975 16 8023 bp 50.52 7.50 92.51
qs_2_scaffold_2267 16 13401 bp 42.86 23.25 81.24
qs_2_scaffold_1155 16 17464 bp 54.68 7.43 74.60
qs_2_scaffold_227
Class: Halobacteria (50%)
16 19941 bp 62.68 40.27 82.70
qs_2_scaffold_1639 16 10974 bp 54.03 6.57 71.35
qs_2_scaffold_449
Class: Halobacteria (62.5%)
16 12526 bp 48.62 40.00 80.26
qs_2_scaffold_334
Domain: Bacteria (62.5%)
16 19158 bp 64.14 18.79 85.39
qs_2_scaffold_1065
Genus: Halococcus (87.5%)
16 12444 bp 65.98 74.00 77.07
qs_2_scaffold_313 16 16953 bp 60.78 14.06 75.92
qs_2_scaffold_2029 16 10846 bp 57.34 6.93 68.40
qs_2_scaffold_590
Class: Halobacteria (56.25%)
16 13131 bp 57.31 25.23 73.61
qs_2_scaffold_927
Class: Halobacteria (50%)
16 8256 bp 58.12 62.58 85.94
qs_2_scaffold_881
Class: Halobacteria (87.5%)
16 14099 bp 66.33 62.43 86.92
qs_2_scaffold_731
Domain: Bacteria (56.25%)
16 12905 bp 63.64 23.39 73.97
qs_2_scaffold_639
Order: Halobacteriales (81.25%)
16 14642 bp 67.43 106.21 89.46
qs_2_scaffold_1646 16 15676 bp 50.92 6.64 72.00
qs_2_scaffold_1601 16 9042 bp 49.81 6.98 54.25
qs_2_scaffold_664
Class: Halobacteria (50%)
16 11265 bp 56.82 13.54 69.83
qs_2_scaffold_342
Species: uncultured archaeon A07HB70 (53.33%)
15 14752 bp 64.56 34.12 91.33
qs_2_scaffold_1281 15 17343 bp 56.62 7.14 73.86
qs_2_scaffold_207
Domain: Bacteria (93.33%)
15 21527 bp 66.12 14.42 90.65
qs_2_scaffold_1466 15 6211 bp 53.42 14.18 89.31
qs_2_scaffold_3003 15 9699 bp 54.43 7.34 74.27
qs_2_scaffold_783 15 9103 bp 56.37 7.25 80.91
qs_2_scaffold_623
Class: Halobacteria (53.33%)
15 15114 bp 57.57 15.48 85.47
qs_2_scaffold_891
Class: Halobacteria (73.33%)
15 13209 bp 61.34 34.64 84.90
qs_2_scaffold_324
Class: Halobacteria (60%)
15 15176 bp 56.90 15.22 89.45
qs_2_scaffold_1169 15 10175 bp 56.24 44.59 52.16
qs_2_scaffold_915
Class: Halobacteria (66.67%)
15 15262 bp 58.50 27.38 87.31
qs_2_scaffold_648 15 10895 bp 61.63 12.77 82.03
qs_2_scaffold_810
Class: Halobacteria (60%)
15 11501 bp 63.09 30.90 83.86
qs_2_scaffold_1057 15 9590 bp 56.57 6.86 75.67
qs_2_scaffold_253
Class: Halobacteria (66.67%)
15 19497 bp 50.17 13.65 77.95
qs_2_scaffold_1380 15 8882 bp 57.13 7.79 66.64
qs_2_scaffold_535
Order: Halobacteriales (53.33%)
15 14091 bp 55.28 29.91 63.30
qs_2_scaffold_288
Class: Halobacteria (53.33%)
15 16432 bp 63.50 10.78 80.08
qs_2_scaffold_514
Class: Halobacteria (53.33%)
15 13605 bp 63.58 31.38 83.48
qs_2_scaffold_271
Class: Halobacteria (60%)
15 16932 bp 53.84 13.13 93.98
Displaying items 201-250 of 14256 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.