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QS_4_UNK

In projects: QS_4  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 36.18 Longest contig: 272.33 Kbp Bin length: 77.60 Mbp GC content: 61.24 %
Contigs count: 24168 Features count: 98476 rRNAs count: 14 tRNAs count: 809

Genome completeness

megabin RP 49 / 55 MC: 43 BSCG 47 / 51 MC: 44 ASCG 38 / 38 MC: 38
Displaying items 551-600 of 24168 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_4_scaffold_965
Domain: Bacteria (76.47%)
17 26115 bp 60.03 36.52 87.44
qs_4_scaffold_1347 16 10825 bp 52.74 15.01 72.78
qs_4_scaffold_2430 16 8579 bp 53.40 26.84 77.04
qs_4_scaffold_1578
Genus: Halococcus (50%)
16 9499 bp 59.59 33.20 73.59
qs_4_scaffold_1049
Class: Halobacteria (62.5%)
16 14832 bp 65.04 77.07 76.82
qs_4_scaffold_876
Order: Halobacteriales (56.25%)
16 15810 bp 55.65 34.76 85.64
qs_4_scaffold_1418
Class: Halobacteria (50%)
16 12024 bp 54.06 50.27 86.28
qs_4_scaffold_1442
Class: Halobacteria (68.75%)
16 17508 bp 56.75 53.79 84.97
qs_4_scaffold_2581
Order: Halobacteriales (68.75%)
16 10099 bp 61.58 47.96 78.28
qs_4_scaffold_1904
Class: Halobacteria (56.25%)
16 7963 bp 62.83 10.70 88.01
qs_4_scaffold_1007
Class: Halobacteria (87.5%)
16 14122 bp 57.46 11.74 85.06
qs_4_scaffold_582 16 21794 bp 56.50 14.11 78.72
qs_4_scaffold_2116
Class: Halobacteria (62.5%)
16 9649 bp 59.75 10.45 74.56
qs_4_scaffold_906 16 15433 bp 61.90 14.24 91.62
qs_4_scaffold_2614
Species: Halosimplex carlsbadense (50%)
16 14039 bp 68.20 79.61 80.04
qs_4_scaffold_1703
Order: Haloferacales (50%)
16 19897 bp 68.38 22.98 80.15
qs_4_scaffold_2618
Class: Halobacteria (100%)
16 9020 bp 59.32 31.01 74.63
qs_4_scaffold_1450
Class: Halobacteria (75%)
16 11919 bp 58.02 45.75 78.25
qs_4_scaffold_1591
Class: Halobacteria (50%)
16 14475 bp 61.84 131.28 83.32
qs_4_scaffold_1430 16 10350 bp 64.62 14.05 98.55
qs_4_scaffold_1937
Class: Halobacteria (62.5%)
16 13376 bp 59.85 36.17 70.78
qs_4_scaffold_2283 16 7677 bp 60.00 65.23 93.32
qs_4_scaffold_1270 16 11562 bp 62.84 9.16 93.15
qs_4_scaffold_982
Order: Natrialbales (50%)
16 15313 bp 62.48 86.98 82.73
qs_4_scaffold_1478
Class: Halobacteria (81.25%)
16 14304 bp 68.98 24.59 69.02
qs_4_scaffold_2077
Order: Halobacteriales (50%)
16 12572 bp 58.98 28.03 73.59
qs_4_scaffold_1340
Order: Halobacteriales (50%)
16 13653 bp 60.41 31.39 81.04
qs_4_scaffold_2193
Order: Bacteroidetes Order II. Incertae sedis (68.75%)
16 19536 bp 66.83 26.09 77.01
qs_4_scaffold_4993
Order: Haloferacales (50%)
16 13494 bp 53.15 64.59 71.52
qs_4_scaffold_845
Class: Halobacteria (68.75%)
16 17303 bp 43.81 9.92 87.77
qs_4_scaffold_1065
Order: Halobacteriales (62.5%)
16 19031 bp 65.46 83.73 76.69
qs_4_scaffold_892
Class: Halobacteria (68.75%)
16 15657 bp 58.91 37.98 83.85
qs_4_scaffold_1457
Order: Halobacteriales (75%)
16 12374 bp 70.41 15.17 89.56
qs_4_scaffold_846 16 16137 bp 54.20 14.89 64.34
qs_4_scaffold_1757 16 8555 bp 56.82 20.34 83.11
qs_4_scaffold_1665
Domain: Bacteria (56.25%)
16 18622 bp 59.86 141.27 79.58
qs_4_scaffold_962
Domain: Bacteria (56.25%)
16 14837 bp 58.71 12.81 78.92
qs_4_scaffold_4784
Order: Halobacteriales (50%)
16 7587 bp 66.17 34.55 87.53
qs_4_scaffold_1989
Class: Halobacteria (62.5%)
16 14060 bp 67.11 37.12 91.28
qs_4_scaffold_734 16 18464 bp 56.93 13.93 83.29
qs_4_scaffold_1092
Class: Halobacteria (75%)
16 13184 bp 57.14 16.82 71.36
qs_4_scaffold_1646 16 9130 bp 52.68 18.70 73.64
qs_4_scaffold_3223 15 9745 bp 54.51 55.24 71.94
qs_4_scaffold_1094
Domain: Bacteria (60%)
15 17778 bp 59.52 120.25 88.15
qs_4_scaffold_1486 15 10041 bp 64.09 11.59 79.24
qs_4_scaffold_2108
Genus: Halococcus (60%)
15 10209 bp 53.97 99.85 80.81
qs_4_scaffold_1188 15 17507 bp 54.32 14.29 56.93
qs_4_scaffold_923
Class: Halobacteria (66.67%)
15 15285 bp 61.34 25.81 90.25
qs_4_scaffold_1627 15 14051 bp 67.82 13.16 82.65
qs_4_scaffold_786
Domain: Archaea (53.33%)
15 26185 bp 68.64 30.80 85.04
Displaying items 551-600 of 24168 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.