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QS_4_UNK

In projects: QS_4  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 36.18 Longest contig: 272.33 Kbp Bin length: 77.60 Mbp GC content: 61.24 %
Contigs count: 24168 Features count: 98476 rRNAs count: 14 tRNAs count: 809

Genome completeness

megabin RP 49 / 55 MC: 43 BSCG 47 / 51 MC: 44 ASCG 38 / 38 MC: 38
Displaying items 1051-1100 of 24168 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_4_scaffold_4200 10 6127 bp 59.92 147.23 59.00
qs_4_scaffold_2085
Order: Halobacteriales (60%)
10 11059 bp 65.39 10.15 84.04
qs_4_scaffold_1463
Class: Halobacteria (60%)
10 10193 bp 55.05 28.10 87.97
qs_4_scaffold_1348
Class: Halobacteria (60%)
10 12070 bp 65.11 24.04 72.55
qs_4_scaffold_1924
Class: Halobacteria (60%)
10 7880 bp 60.49 15.91 93.92
qs_4_scaffold_3090
Domain: Bacteria (70%)
10 11526 bp 61.95 109.34 80.06
qs_4_scaffold_2431
Order: Haloferacales (60%)
10 6301 bp 62.09 37.31 88.89
qs_4_scaffold_1763
Order: Natrialbales (70%)
10 8529 bp 60.83 32.52 89.27
qs_4_scaffold_3849
Order: Halobacteriales (50%)
10 7120 bp 57.08 11.01 70.37
qs_4_scaffold_2224
Order: Halobacteriales (70%)
10 8665 bp 58.57 13.85 85.20
qs_4_scaffold_2961
Class: Halobacteria (70%)
10 8791 bp 61.23 9.01 74.71
qs_4_scaffold_2201
Order: Halobacteriales (50%)
10 9887 bp 57.52 11.07 88.06
qs_4_scaffold_2821
Class: Halobacteria (70%)
10 5520 bp 56.79 54.11 65.98
qs_4_scaffold_2478 10 6188 bp 49.79 23.38 62.64
qs_4_scaffold_1257
Class: Halobacteria (50%)
10 11696 bp 56.21 9.42 75.03
qs_4_scaffold_1833
Order: Haloferacales (60%)
10 8946 bp 57.74 13.46 92.25
qs_4_scaffold_10266
Order: Halobacteriales (50%)
10 5222 bp 59.86 67.45 90.20
qs_4_scaffold_2340
Genus: Natronomonas (60%)
10 10018 bp 66.82 18.24 82.38
qs_4_scaffold_2577
Domain: Bacteria (70%)
10 5982 bp 55.55 25.56 74.22
qs_4_scaffold_1949
Class: Halobacteria (50%)
10 8521 bp 55.59 31.22 63.61
qs_4_scaffold_2041 10 7375 bp 61.71 11.35 80.30
qs_4_scaffold_4035
Order: Halobacteriales (60%)
10 8647 bp 63.68 70.87 88.54
qs_4_scaffold_2479 10 6186 bp 50.52 14.92 52.09
qs_4_scaffold_5086
Class: Halobacteria (80%)
10 6395 bp 60.88 9.34 69.66
qs_4_scaffold_2410 10 6348 bp 55.89 18.89 71.74
qs_4_scaffold_1696
Class: Halobacteria (60%)
10 8820 bp 55.61 11.75 86.09
qs_4_scaffold_4422 10 10574 bp 58.52 37.77 95.21
qs_4_scaffold_1673
Domain: Bacteria (60%)
10 8975 bp 51.90 12.14 76.01
qs_4_scaffold_2180
Order: Halobacteriales (50%)
10 6945 bp 65.72 22.07 64.75
qs_4_scaffold_2835
Class: Halobacteria (50%)
10 7845 bp 60.62 73.17 80.76
qs_4_scaffold_2042
Species: Halosimplex carlsbadense (50%)
10 12684 bp 64.36 72.28 90.11
qs_4_scaffold_1351
Class: Halobacteria (60%)
10 12041 bp 67.89 72.68 93.38
qs_4_scaffold_2388
Class: Halobacteria (50%)
10 6410 bp 57.86 10.90 81.72
qs_4_scaffold_1236 10 11872 bp 61.04 13.97 75.23
qs_4_scaffold_2588
Class: Halobacteria (90%)
10 5968 bp 63.37 38.32 90.08
qs_4_scaffold_2204 10 6893 bp 61.25 55.58 34.34
qs_4_scaffold_2706
Order: Halobacteriales (60%)
10 7144 bp 50.06 18.65 72.44
qs_4_scaffold_4433 10 5211 bp 58.88 44.02 83.36
qs_4_scaffold_2527
Order: Halobacteriales (70%)
10 6088 bp 55.12 27.25 92.16
qs_4_scaffold_1882 10 8044 bp 59.37 23.09 70.45
qs_4_scaffold_1237
Domain: Bacteria (90%)
10 19071 bp 64.38 22.78 82.55
qs_4_scaffold_1145
Genus: Nitrosococcus (60%)
10 12757 bp 66.33 11.61 86.45
qs_4_scaffold_3406
Genus: Halococcus (60%)
10 7521 bp 63.44 51.92 78.58
qs_4_scaffold_1491
Genus: Halococcus (50%)
10 10011 bp 66.15 32.50 85.41
qs_4_scaffold_3712
Class: Halobacteria (70%)
10 8639 bp 56.73 86.56 79.52
qs_4_scaffold_1952
Species: Salinibacter ruber (80%)
10 7745 bp 63.55 30.85 75.84
qs_4_scaffold_2551
Class: Halobacteria (50%)
10 8407 bp 57.75 17.49 77.72
qs_4_scaffold_3713 10 4327 bp 57.66 23.27 72.87
qs_4_scaffold_5346
Class: Halobacteria (50%)
10 4131 bp 64.88 14.67 95.42
qs_4_scaffold_3262 10 4849 bp 55.56 21.72 71.56
Displaying items 1051-1100 of 24168 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.