ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 22.55 Longest contig: 253.36 Kbp Bin length: 44.06 Mbp GC content: 60.59 %

Contigs count: 15674 Features count: 56776 rRNAs count: 17 tRNAs count: 494

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 50 / 51 MC: 38 ASCG 38 / 38 MC: 38

Displaying items 15251-15300 of 15674 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_6_scaffold_6611 Species: Halosimplex carlsbadense (66.67%)	3	2032 bp	72.49	15.75	100.25
sw_6_scaffold_13698 Species: Halobacterium sp. DL1 (50%)	2	1218 bp	64.29	11.82	100.25
sw_6_scaffold_13742 Species: Natronomonas moolapensis (50%)	2	1215 bp	77.53	26.01	100.25
sw_6_scaffold_9204 Genus: Halorubrum (66.67%)	3	1610 bp	69.01	12.30	100.25
sw_6_scaffold_13897 Species: Halogeometricum borinquense (50%)	2	1206 bp	69.90	40.46	100.25
sw_6_scaffold_13947 Species: RBG_16_Deltaproteobacteria_71_12_curated (50%)	2	1203 bp	68.16	8.40	100.25
sw_6_scaffold_9289 Species: Halovivax ruber (50%)	2	1601 bp	70.33	26.92	100.25
sw_6_scaffold_14036 Species: Halorhabdus utahensis (50%)	2	1197 bp	68.50	32.83	100.25
sw_6_scaffold_12170 Class: Halobacteria (66.67%)	3	1993 bp	59.46	7.58	100.25
sw_6_scaffold_13748 Species: Halorhabdus tiamatea (50%)	2	1592 bp	73.12	24.37	100.25
sw_6_scaffold_14147 Species: Natronomonas pharaonis (50%)	2	1191 bp	66.08	31.07	100.25
sw_6_scaffold_26774 Species: Halorhabdus utahensis (100%)	2	1191 bp	67.00	17.88	100.25
sw_6_scaffold_14258	2	1185 bp	51.48	7.34	100.25
sw_6_scaffold_14307 Species: Halococcus hamelinensis (50%)	2	1182 bp	72.76	10.41	100.25
sw_6_scaffold_9560 Species: Natronomonas pharaonis (50%)	2	1568 bp	68.30	17.35	100.26
sw_6_scaffold_14486 Species: RLO_PLX_64_10 (50%)	2	1173 bp	67.43	13.21	100.26
sw_6_scaffold_14527 Species: Halovivax asiaticus (50%)	2	1170 bp	63.16	11.45	100.26
sw_6_scaffold_14534 Species: Halococcus saccharolyticus (50%)	2	1170 bp	72.74	39.40	100.26
sw_6_scaffold_22063 Class: Halobacteria (66.67%)	3	1559 bp	64.46	8.47	100.26
sw_6_scaffold_14991	2	1143 bp	55.73	5.60	100.26
sw_6_scaffold_7626 Species: Natronomonas moolapensis (50%)	4	4949 bp	70.54	23.92	100.26
sw_6_scaffold_10051 Species: Halobacterium sp. DL1 (50%)	2	1514 bp	69.95	47.75	100.26
sw_6_scaffold_28902 Species: Natronomonas moolapensis (100%)	2	1134 bp	77.16	23.63	100.27
sw_6_scaffold_15215 Species: Halobacterium sp. DL1 (100%)	2	1131 bp	69.94	9.73	100.27
sw_6_scaffold_15225 Species: Candidatus Entotheonella sp. TSY2 (50%)	2	1131 bp	56.59	5.48	100.27
sw_6_scaffold_10129 Species: Halomonas sp. PBN3 (50%)	2	1505 bp	72.69	7.64	100.27
sw_6_scaffold_10161 Species: Halosimplex carlsbadense (100%)	2	1502 bp	64.38	17.44	100.27
sw_6_scaffold_15316 Species: Natronomonas moolapensis (50%)	2	1125 bp	70.76	22.84	100.27
sw_6_scaffold_5870 Species: Halogranum salarium (50%)	2	2217 bp	70.18	10.19	100.27
sw_6_scaffold_15692 Species: Haloarcula argentinensis (50%)	2	1104 bp	68.12	19.11	100.27
sw_6_scaffold_15757 Species: Natronomonas pharaonis (100%)	2	1101 bp	71.39	23.71	100.27
sw_6_scaffold_15759 Species: Halococcus salifodinae (50%)	2	1101 bp	60.40	6.45	100.27
sw_6_scaffold_5938 Species: Halococcus salifodinae (100%)	2	2196 bp	66.58	17.53	100.27
sw_6_scaffold_15812 Species: Natronomonas moolapensis (50%)	2	1098 bp	68.49	33.24	100.27
sw_6_scaffold_10544 Species: Haloarcula marismortui (100%)	2	1463 bp	54.07	9.84	100.27
sw_6_scaffold_7902 Species: Natronomonas pharaonis (100%)	2	1798 bp	66.63	20.91	100.28
sw_6_scaffold_9144 Species: Anabaena sp. 90 (66.67%)	3	3587 bp	65.63	22.30	100.28
sw_6_scaffold_16528 Species: Natronomonas moolapensis (50%)	2	1062 bp	74.67	28.63	100.28
sw_6_scaffold_16648 Species: Natronomonas pharaonis (50%)	2	1056 bp	71.02	30.21	100.28
sw_6_scaffold_11154 Species: Halococcus saccharolyticus (50%)	2	1406 bp	71.19	26.24	100.28
sw_6_scaffold_29673 Species: Natronomonas pharaonis (100%)	2	1053 bp	71.79	26.12	100.29
sw_6_scaffold_16712 Species: Candidatus Halobonum tyrrellensis (50%)	2	1053 bp	73.50	16.81	100.29
sw_6_scaffold_16782 Species: Rickettsia canadensis (50%)	2	1050 bp	55.05	7.24	100.29
sw_6_scaffold_6321 Order: Halobacteriales (66.67%)	3	2100 bp	64.05	8.57	100.29
sw_6_scaffold_16925	2	1044 bp	42.24	6.70	100.29
sw_6_scaffold_16942 Species: Halorubrum coriense (100%)	2	1044 bp	64.94	9.67	100.29
sw_6_scaffold_11456 Species: Haloferax volcanii (50%)	2	1379 bp	61.64	5.66	100.29
sw_6_scaffold_8374 Species: Haloferax sp. BAB2207 (100%)	2	1723 bp	59.32	10.04	100.29
sw_6_scaffold_8376 Genus: Natronomonas (80%)	5	1723 bp	68.08	27.51	100.29
sw_6_scaffold_6477 Species: Haloferax sulfurifontis (50%)	2	2061 bp	73.56	9.56	100.29

Displaying items 15251-15300 of 15674 in total

SW_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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