ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 24.23 Longest contig: 413.20 Kbp Bin length: 52.67 Mbp GC content: 60.00 %

Contigs count: 18366 Features count: 69333 rRNAs count: 17 tRNAs count: 772

Genome completeness

megabin RP 50 / 55 MC: 47 BSCG 50 / 51 MC: 41 ASCG 38 / 38 MC: 37

Displaying items 17851-17900 of 18366 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_7_scaffold_18850 Species: Halorubrum litoreum (50%)	2	1102 bp	72.69	52.18	100.18
sw_7_scaffold_18856 Species: Natronomonas moolapensis (50%)	2	1102 bp	71.60	34.39	100.18
sw_7_scaffold_25215 Order: Halobacteriales (66.67%)	3	1653 bp	71.57	23.53	100.18
sw_7_scaffold_11609 Species: Halosimplex carlsbadense (66.67%)	3	1641 bp	72.33	13.10	100.18
sw_7_scaffold_38797	2	1093 bp	69.17	8.51	100.18
sw_7_scaffold_35307 Species: Halopiger xanaduensis (50%)	2	1084 bp	64.48	9.41	100.18
sw_7_scaffold_19195 Species: Natronomonas pharaonis (50%)	2	1084 bp	70.94	72.79	100.18
sw_7_scaffold_11933 Species: Haloferax denitrificans (50%)	2	1605 bp	67.66	75.26	100.19
sw_7_scaffold_19530	2	1069 bp	23.67	4.96	100.19
sw_7_scaffold_11177 Species: Halorubrum tebenquichense (66.67%)	3	2135 bp	69.04	29.24	100.19
sw_7_scaffold_11976 Species: Micromonospora aurantiaca (50%)	2	1599 bp	74.11	20.58	100.19
sw_7_scaffold_8397 Species: Haloarcula sinaiiensis (50%)	2	2132 bp	68.39	15.62	100.19
sw_7_scaffold_19794 Species: Candidatus Nanosalina sp. J07AB43 (50%)	2	1057 bp	48.16	4.64	100.19
sw_7_scaffold_8570 Species: Halovivax ruber (66.67%)	3	2099 bp	64.98	7.81	100.19
sw_7_scaffold_19995 Species: Halomicrobium mukohataei (50%)	2	1048 bp	65.74	7.44	100.19
sw_7_scaffold_20063 Species: Halovivax ruber (50%)	2	1045 bp	68.23	9.67	100.19
sw_7_scaffold_12277 Order: Halobacteriales (60%)	5	1566 bp	68.39	14.81	100.19
sw_7_scaffold_19775 Species: Symbiobacterium thermophilum (50%)	2	1563 bp	71.59	9.47	100.19
sw_7_scaffold_12375 Order: Halobacteriales (100%)	3	1554 bp	64.67	23.10	100.19
sw_7_scaffold_25587	2	1554 bp	61.65	6.95	100.19
sw_7_scaffold_12407 Species: Natronomonas moolapensis (50%)	2	1551 bp	63.57	15.09	100.19
sw_7_scaffold_20357 Species: Natronomonas moolapensis (50%)	2	1033 bp	74.25	52.18	100.19
sw_7_scaffold_20417 Species: Halococcus salifodinae (100%)	2	1030 bp	60.78	6.41	100.19
sw_7_scaffold_20483 Species: Halococcus salifodinae (50%)	2	1027 bp	70.01	14.51	100.20
sw_7_scaffold_20486 Species: Haloarcula amylolytica (50%)	2	1027 bp	55.21	7.79	100.20
sw_7_scaffold_20495 Species: Natrinema gari (50%)	2	1027 bp	55.60	13.92	100.20
sw_7_scaffold_20696 Species: [Clostridium] litorale (50%)	2	1018 bp	66.31	10.51	100.20
sw_7_scaffold_20847 Species: Salinibacter ruber (50%)	2	1012 bp	65.22	7.11	100.20
sw_7_scaffold_20936 Species: Natronomonas pharaonis (50%)	2	1009 bp	72.15	24.68	100.20
sw_7_scaffold_5466 Order: Halobacteriales (66.67%)	3	5039 bp	66.62	54.18	100.20
sw_7_scaffold_12839 Species: Natronolimnobius innermongolicus (50%)	2	1509 bp	54.94	17.43	100.20
sw_7_scaffold_12891 Species: Natronomonas moolapensis (50%)	2	2006 bp	67.95	16.90	100.20
sw_7_scaffold_21133 Species: Haloarcula japonica (50%)	2	1000 bp	69.50	15.30	100.20
sw_7_scaffold_21135 Species: Halosimplex carlsbadense (100%)	2	1000 bp	70.20	13.50	100.20
sw_7_scaffold_21144 Species: Natronolimnobius innermongolicus (50%)	2	1000 bp	58.30	6.00	100.20
sw_7_scaffold_10605 Species: Halococcus saccharolyticus (50%)	2	2979 bp	65.29	29.27	100.20
sw_7_scaffold_13130 Species: Salinibacter ruber (100%)	2	1482 bp	68.62	9.18	100.20
sw_7_scaffold_13288 Species: Mycobacterium smegmatis (50%)	2	1467 bp	76.01	19.50	100.21
sw_7_scaffold_13320 Species: Haloferax denitrificans (50%)	2	1464 bp	71.04	14.28	100.21
sw_7_scaffold_13354 Species: Halorhabdus utahensis (50%)	2	1461 bp	60.03	9.45	100.21
sw_7_scaffold_9495 Species: CG_Dehalo_02 (50%)	2	1931 bp	68.31	127.24	100.21
sw_7_scaffold_7752 Species: Haloterrigena thermotolerans (50%)	2	2892 bp	69.54	76.01	100.21
sw_7_scaffold_16641 Species: Methanosaeta harundinacea (50%)	2	1919 bp	72.23	10.37	100.21
sw_7_scaffold_19483 Species: Natronomonas moolapensis (50%)	2	1413 bp	68.58	47.13	100.21
sw_7_scaffold_9833 Domain: Bacteria (100%)	3	1877 bp	35.22	6.82	100.21
sw_7_scaffold_13974 Species: Deinococcus gobiensis (50%)	2	1407 bp	57.07	5.69	100.21
sw_7_scaffold_13975 Species: Salinibacter ruber (100%)	2	1407 bp	65.53	31.91	100.21
sw_7_scaffold_14021 Species: Haladaptatus paucihalophilus (50%)	2	1404 bp	69.73	42.45	100.21
sw_7_scaffold_14056 Species: Halobiforma lacisalsi (50%)	2	1401 bp	62.10	8.42	100.21
sw_7_scaffold_9964 Species: Salinibacter ruber (100%)	2	1859 bp	64.34	28.29	100.22

Displaying items 17851-17900 of 18366 in total

SW_7_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_7_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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