ggKbase home page
Advanced Search
Search Help

SW_7_UNK

In projects: SW_7  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 24.23 Longest contig: 413.20 Kbp Bin length: 52.67 Mbp GC content: 60.00 %
Contigs count: 18366 Features count: 69333 rRNAs count: 17 tRNAs count: 772

Genome completeness

megabin RP 50 / 55 MC: 47 BSCG 50 / 51 MC: 41 ASCG 38 / 38 MC: 37
Displaying items 251-300 of 18366 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_7_scaffold_10134
Species: Halosimplex carlsbadense (66.67%)
3 1835 bp 72.37 14.99 100.71
sw_7_scaffold_10084
Order: Halobacteriales (66.67%)
3 1841 bp 65.73 12.44 100.71
sw_7_scaffold_12178
Species: halophilic archaeon DL31 (100%)
2 1576 bp 59.84 17.26 100.70
sw_7_scaffold_17861
Species: Natrinema pellirubrum (100%)
2 1150 bp 61.13 57.22 100.70
sw_7_scaffold_17690
Species: Nocardiopsis dassonvillei (50%)
2 1159 bp 70.32 7.68 100.69
sw_7_scaffold_21421
Genus: Halogeometricum (66.67%)
3 1770 bp 65.42 13.56 100.68
sw_7_scaffold_16914
Species: Halococcus salifodinae (50%)
2 1201 bp 53.21 7.49 100.67
sw_7_scaffold_9321
Domain: Archaea (66.67%)
3 1958 bp 43.56 5.36 100.66
sw_7_scaffold_12735
Species: Halococcus thailandensis (100%)
4 3165 bp 62.94 12.13 100.66
sw_7_scaffold_16460
Species: Salinibacter ruber (50%)
2 1228 bp 67.35 23.37 100.65
sw_7_scaffold_19129
Species: Halostagnicola sp. A56 (66.67%)
3 1088 bp 63.88 31.07 100.64
sw_7_scaffold_19086
Order: Halobacteriales (66.67%)
3 1091 bp 72.23 31.53 100.64
sw_7_scaffold_13939
Genus: Halococcus (66.67%)
3 1410 bp 65.39 30.99 100.64
sw_7_scaffold_18354 4 1127 bp 68.06 15.97 100.62
sw_7_scaffold_13410
Domain: Bacteria (75%)
4 1455 bp 60.07 14.30 100.62
sw_7_scaffold_17958
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1145 bp 69.61 14.32 100.61
sw_7_scaffold_11669
Domain: Bacteria (75%)
4 3125 bp 71.42 9.50 100.61
sw_7_scaffold_2990
Species: RBG_16_Micrarchaeota_49_10_curated (50%)
2 5770 bp 45.53 6.36 100.61
sw_7_scaffold_17626
Species: Natronomonas moolapensis (50%)
2 1163 bp 72.40 49.01 100.60
sw_7_scaffold_17361 3 1178 bp 59.85 8.32 100.59
sw_7_scaffold_20888
Order: Halobacteriales (66.67%)
3 1011 bp 70.03 12.17 100.59
sw_7_scaffold_14597
Order: Thermoplasmatales (50%)
4 1354 bp 68.54 9.08 100.59
sw_7_scaffold_20745
Species: RBG_16_KB1_OP1_55_9_curated (50%)
2 1017 bp 51.92 4.52 100.59
sw_7_scaffold_25614
Species: Halococcus morrhuae (50%)
2 1363 bp 62.00 10.79 100.59
sw_7_scaffold_17072
Species: Haloferax elongans (50%)
2 1193 bp 62.53 5.28 100.59
sw_7_scaffold_17001 3 1196 bp 69.06 7.61 100.59
sw_7_scaffold_14422
Species: Rhodothermus marinus (50%)
2 1369 bp 46.53 5.41 100.58
sw_7_scaffold_12320
Order: Halobacteriales (66.67%)
6 2067 bp 66.13 23.22 100.58
sw_7_scaffold_16750
Species: Natrinema versiforme (50%)
2 1211 bp 54.42 12.63 100.58
sw_7_scaffold_14112
Species: Natronomonas pharaonis (50%)
2 1396 bp 68.41 97.13 100.57
sw_7_scaffold_6302 3 2628 bp 49.81 8.14 100.57
sw_7_scaffold_16440
Species: Salinisphaera shabanensis (50%)
2 1229 bp 66.07 6.35 100.57
sw_7_scaffold_9940 3 3213 bp 51.98 5.42 100.56
sw_7_scaffold_19418
Species: Ruminococcus torques CAG:61 (50%)
2 1074 bp 51.12 4.28 100.56
sw_7_scaffold_10405 4 1793 bp 48.80 6.97 100.56
sw_7_scaffold_19223
Species: Haloferax mucosum (50%)
2 1083 bp 71.01 8.96 100.55
sw_7_scaffold_13455
Domain: Bacteria (66.67%)
3 1450 bp 46.14 5.52 100.55
sw_7_scaffold_9081
Class: Halobacteria (66.67%)
3 1996 bp 72.70 10.27 100.55
sw_7_scaffold_11475
Species: marine sediment metagenome (50%)
2 1653 bp 45.01 5.75 100.54
sw_7_scaffold_30551
Genus: Halococcus (66.67%)
3 1295 bp 73.13 52.66 100.54
sw_7_scaffold_13116
Species: uncultured archaeon A07HB70 (50%)
2 1483 bp 59.07 11.19 100.54
sw_7_scaffold_18630
Species: Haloferax denitrificans (50%)
2 1113 bp 59.30 15.54 100.54
sw_7_scaffold_19416
Domain: Archaea (66.67%)
3 1674 bp 62.01 7.95 100.54
sw_7_scaffold_11256
Class: Halobacteria (66.67%)
3 1683 bp 60.37 6.95 100.54
sw_7_scaffold_17585
Species: Haloquadratum walsbyi (66.67%)
3 1686 bp 61.09 13.17 100.53
sw_7_scaffold_11090 2 1704 bp 44.89 6.04 100.53
sw_7_scaffold_8623
Species: Halosimplex carlsbadense (75%)
4 2089 bp 67.78 25.08 100.53
sw_7_scaffold_8607 3 2092 bp 74.67 107.17 100.53
sw_7_scaffold_26551
Order: Halobacteriales (66.67%)
3 1146 bp 72.08 107.94 100.52
sw_7_scaffold_17774
Order: Halobacteriales (66.67%)
3 1155 bp 67.27 15.41 100.52
Displaying items 251-300 of 18366 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.