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SW_10_UNK

In projects: SW_10  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.60 Longest contig: 134.98 Kbp Bin length: 42.41 Mbp GC content: 58.85 %
Contigs count: 17394 Features count: 56831 rRNAs count: 22 tRNAs count: 557

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 45 / 51 MC: 40 ASCG 38 / 38 MC: 37
Displaying items 15551-15600 of 17394 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_13919
Species: Pedobacter glucosidilyticus (50%)
2 2059 bp 36.23 5.59 49.68
sw_10_scaffold_16900
Species: marine sediment metagenome (50%)
2 1128 bp 27.48 5.59 92.29
sw_10_scaffold_13017 4 2056 bp 54.33 5.59 48.01
sw_10_scaffold_14871
Species: Musa acuminata (50%)
2 1235 bp 56.52 5.59 93.04
sw_10_scaffold_5097
Phylum: Streptophyta (66.67%)
3 2451 bp 51.00 5.59 96.70
sw_10_scaffold_10303 3 1573 bp 51.24 5.59 100.70
sw_10_scaffold_16538
Species: Haloferax gibbonsii (50%)
2 1144 bp 46.33 5.59 80.24
sw_10_scaffold_19325 4 1663 bp 53.58 5.59 90.20
sw_10_scaffold_23489 3 1663 bp 49.61 5.59 49.97
sw_10_scaffold_16555 2 1144 bp 56.38 5.59 61.36
sw_10_scaffold_3648 8 4006 bp 28.06 5.59 90.09
sw_10_scaffold_14280
Species: Zea mays (50%)
2 1270 bp 57.32 5.59 81.97
sw_10_scaffold_19857
Species: Salinibacter ruber (50%)
2 1001 bp 63.24 5.59 116.88
sw_10_scaffold_33762 3 1180 bp 56.36 5.59 86.69
sw_10_scaffold_18927 3 1038 bp 54.53 5.59 79.48
sw_10_scaffold_2076
Species: Xylanimonas cellulosilytica (100%)
1 4224 bp 38.71 5.59 96.95
sw_10_scaffold_18948 2 1038 bp 55.59 5.59 80.06
sw_10_scaffold_16879
Species: Halorubrum phage GNf2 (100%)
1 1128 bp 54.61 5.59 99.73
sw_10_scaffold_16886 2 1128 bp 49.29 5.59 100.00
sw_10_scaffold_8715
Genus: Natronorubrum (66.67%)
3 1753 bp 52.37 5.59 99.77
sw_10_scaffold_18965
Species: Halorubrum phage GNf2 (50%)
2 1037 bp 54.10 5.59 78.69
sw_10_scaffold_7582
Species: Nannochloropsis gaditana (50%)
2 2509 bp 53.29 5.58 72.22
sw_10_scaffold_24160 1 1290 bp 54.57 5.58 13.02
sw_10_scaffold_17663 1 1093 bp 54.71 5.58 38.70
sw_10_scaffold_13965 3 2884 bp 51.28 5.58 72.40
sw_10_scaffold_9231
Species: Blastopirellula marina (100%)
1 1685 bp 65.64 5.58 99.88
sw_10_scaffold_10068 2 1596 bp 47.93 5.58 50.00
sw_10_scaffold_17239 2 1112 bp 27.34 5.58 97.39
sw_10_scaffold_5348
Domain: Viridiplantae (66.67%)
3 2384 bp 59.48 5.58 70.09
sw_10_scaffold_23519 2 1596 bp 49.69 5.58 32.52
sw_10_scaffold_9563 2 1650 bp 41.52 5.58 100.36
sw_10_scaffold_9119 2 2798 bp 42.24 5.58 97.78
sw_10_scaffold_18911 1 1039 bp 52.45 5.58 48.22
sw_10_scaffold_9590
Species: Salpingoeca rosetta (50%)
2 1648 bp 53.03 5.58 101.58
sw_10_scaffold_5683 5 3442 bp 39.74 5.58 71.30
sw_10_scaffold_27258
Species: Guillardia theta (50%)
2 1451 bp 50.31 5.58 64.92
sw_10_scaffold_8701 2 1755 bp 54.19 5.58 65.13
sw_10_scaffold_9404 1 1667 bp 38.03 5.58 54.35
sw_10_scaffold_6657
Domain: Viruses (60%)
5 3789 bp 29.01 5.57 97.62
sw_10_scaffold_11624
Species: Candidatus Nanosalina sp. J07AB43 (100%)
2 1454 bp 52.20 5.57 100.69
sw_10_scaffold_26267
Species: Cyclobacterium qasimii (50%)
2 2029 bp 34.35 5.57 46.87
sw_10_scaffold_26277 3 1581 bp 44.78 5.57 104.36
sw_10_scaffold_4380
Class: Bacteroidia (66.67%)
3 3661 bp 35.18 5.57 91.29
sw_10_scaffold_11658 3 1940 bp 55.21 5.57 72.37
sw_10_scaffold_12827 3 1365 bp 53.04 5.57 55.38
sw_10_scaffold_10997 3 1507 bp 37.16 5.57 70.27
sw_10_scaffold_6748 3 2065 bp 58.50 5.57 60.44
sw_10_scaffold_7456
Species: RBG_13_RIF08_66_14_curated (100%)
1 1940 bp 39.18 5.57 99.90
sw_10_scaffold_28054
Species: RLO_Nitrospinae_45_22 (50%)
2 1418 bp 55.71 5.57 102.19
sw_10_scaffold_17998
Species: Natrinema pallidum (50%)
2 1077 bp 50.05 5.57 96.10
Displaying items 15551-15600 of 17394 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.