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SW_10_UNK

In projects: SW_10  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.60 Longest contig: 134.98 Kbp Bin length: 42.41 Mbp GC content: 58.85 %
Contigs count: 17394 Features count: 56831 rRNAs count: 22 tRNAs count: 557

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 45 / 51 MC: 40 ASCG 38 / 38 MC: 37
Displaying items 15601-15650 of 17394 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_6561 3 3806 bp 52.10 5.57 59.04
sw_10_scaffold_10419 4 1562 bp 35.40 5.57 42.83
sw_10_scaffold_2505
Class: Halobacteria (60%)
5 3749 bp 41.16 5.57 88.34
sw_10_scaffold_11154 1 1492 bp 41.35 5.56 71.58
sw_10_scaffold_37367 2 1026 bp 43.18 5.56 35.67
sw_10_scaffold_13704
Domain: Bacteria (100%)
3 1944 bp 40.69 5.56 81.64
sw_10_scaffold_5052 1 2465 bp 50.91 5.56 99.92
sw_10_scaffold_32928 3 1151 bp 46.83 5.56 73.76
sw_10_scaffold_9693
Phylum: Streptophyta (66.67%)
3 1637 bp 52.66 5.56 95.85
sw_10_scaffold_13049
Species: Salvelinus alpinus (100%)
1 1348 bp 53.71 5.56 35.83
sw_10_scaffold_9037 1 1710 bp 48.07 5.56 7.02
sw_10_scaffold_25740
Class: Halobacteria (50%)
4 1332 bp 43.47 5.56 89.86
sw_10_scaffold_8640 3 1764 bp 49.32 5.56 48.30
sw_10_scaffold_8648
Species: Tannerella sp. 6_1_58FAA_CT1 (50%)
2 1762 bp 46.03 5.56 99.77
sw_10_scaffold_9348 3 1672 bp 55.38 5.56 56.34
sw_10_scaffold_15723
Species: Zea mays (50%)
2 1188 bp 51.18 5.56 92.42
sw_10_scaffold_15033
Domain: Viridiplantae (50%)
4 2860 bp 56.57 5.56 65.04
sw_10_scaffold_16402
Species: RHI_Planctomycetes_42_15 (50%)
2 1152 bp 44.18 5.56 65.63
sw_10_scaffold_15052 2 1224 bp 45.10 5.56 74.51
sw_10_scaffold_16646 3 1638 bp 51.28 5.56 43.96
sw_10_scaffold_20975 3 1659 bp 45.21 5.55 100.90
sw_10_scaffold_18749 2 1045 bp 51.39 5.55 18.09
sw_10_scaffold_18755 1 1045 bp 58.47 5.55 8.33
sw_10_scaffold_32868
Species: Natrialba taiwanensis (100%)
2 1315 bp 47.15 5.55 76.88
sw_10_scaffold_17670 2 1586 bp 52.27 5.55 59.77
sw_10_scaffold_5544 2 2325 bp 46.71 5.55 73.81
sw_10_scaffold_13276
Species: Treponema azotonutricium (50%)
2 1333 bp 39.68 5.55 78.09
sw_10_scaffold_16085 2 1676 bp 51.19 5.55 50.66
sw_10_scaffold_14723 3 1244 bp 58.20 5.55 86.58
sw_10_scaffold_5149 6 4903 bp 50.52 5.55 65.90
sw_10_scaffold_17514
Species: Nicotiana benthamiana (100%)
1 1100 bp 60.73 5.55 99.82
sw_10_scaffold_13821 3 1297 bp 35.16 5.55 70.78
sw_10_scaffold_17547 1 1099 bp 50.77 5.55 88.17
sw_10_scaffold_8891 1 1730 bp 57.34 5.55 85.14
sw_10_scaffold_15023 3 1226 bp 47.63 5.55 99.84
sw_10_scaffold_12738 1 1370 bp 51.97 5.55 56.28
sw_10_scaffold_19191
Species: Vibrio tubiashii (50%)
2 1027 bp 50.34 5.55 89.68
sw_10_scaffold_14125
Species: Natronococcus amylolyticus (50%)
2 1280 bp 61.72 5.55 95.16
sw_10_scaffold_17106 1 1118 bp 54.29 5.55 21.20
sw_10_scaffold_17113 1 1118 bp 50.45 5.55 7.78
sw_10_scaffold_16671
Species: Halogranum salarium (100%)
1 1137 bp 45.21 5.54 100.00
sw_10_scaffold_4358
Species: Haloferax larsenii (50%)
2 2709 bp 48.69 5.54 96.79
sw_10_scaffold_28790
Species: RBG_13_Chloroflexi_52_14_curated (50%)
2 1551 bp 52.87 5.54 64.80
sw_10_scaffold_10520 1 1552 bp 57.60 5.54 99.94
sw_10_scaffold_17460
Species: RIFOXYD1_FULL_OD1_Magasanikbacteria_40_23_curated (100%)
1 1102 bp 48.64 5.54 82.21
sw_10_scaffold_8095
Species: Candidatus Nanosalinarum sp. J07AB56 (100%)
1 1842 bp 50.76 5.54 99.84
sw_10_scaffold_10529
Species: Tetrahymena thermophila (50%)
2 1552 bp 43.81 5.54 89.11
sw_10_scaffold_14912 2 2074 bp 52.36 5.54 20.54
sw_10_scaffold_14692
Species: uncultured bacterium (50%)
2 1245 bp 43.53 5.54 88.19
sw_10_scaffold_8346 3 3446 bp 51.94 5.54 56.85
Displaying items 15601-15650 of 17394 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.