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SW_10_UNK

In projects: SW_10  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.60 Longest contig: 134.98 Kbp Bin length: 42.41 Mbp GC content: 58.85 %
Contigs count: 17394 Features count: 56831 rRNAs count: 22 tRNAs count: 557

Genome completeness

megabin RP 51 / 55 MC: 46 BSCG 45 / 51 MC: 40 ASCG 38 / 38 MC: 37
Displaying items 16551-16600 of 17394 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_10_scaffold_15830 3 1183 bp 54.52 4.90 90.79
sw_10_scaffold_10527
Species: Bacillus infantis (50%)
2 1552 bp 34.47 4.90 85.05
sw_10_scaffold_14008 3 1286 bp 45.57 4.90 87.95
sw_10_scaffold_15417
Domain: Archaea (66.67%)
3 1203 bp 37.66 4.90 88.03
sw_10_scaffold_4450 4 2675 bp 38.09 4.90 71.10
sw_10_scaffold_16558
Class: Halobacteria (66.67%)
3 1144 bp 56.99 4.90 60.84
sw_10_scaffold_6565 7 2100 bp 44.52 4.90 83.57
sw_10_scaffold_19369
Species: Candidatus Haloredivivus sp. G17 (50%)
2 1020 bp 46.76 4.90 100.29
sw_10_scaffold_12233 1 1407 bp 41.01 4.90 99.79
sw_10_scaffold_7100 3 2001 bp 37.43 4.90 59.97
sw_10_scaffold_13004
Species: Oryza glaberrima (100%)
1 1351 bp 56.40 4.89 67.28
sw_10_scaffold_6659 2 2084 bp 42.08 4.89 94.87
sw_10_scaffold_17408
Species: Halobacterium sp. DL1 (100%)
2 1104 bp 53.89 4.89 99.73
sw_10_scaffold_2884 4 4294 bp 25.94 4.89 95.16
sw_10_scaffold_18319
Species: GWA2_OD1_44_15_partial (50%)
2 1064 bp 42.86 4.89 98.68
sw_10_scaffold_20231
Species: Rubrobacter radiotolerans (50%)
2 1922 bp 56.61 4.89 58.22
sw_10_scaffold_18831 1 1042 bp 54.32 4.89 99.90
sw_10_scaffold_12172 2 1412 bp 53.68 4.89 67.56
sw_10_scaffold_19323 1 1022 bp 54.70 4.89 99.80
sw_10_scaffold_16162
Species: Halogeometricum borinquense (100%)
1 1165 bp 39.40 4.89 99.91
sw_10_scaffold_10482
Species: CG_Omnitr_02 (50%)
2 1556 bp 58.10 4.88 93.70
sw_10_scaffold_20064 2 2010 bp 31.29 4.88 78.51
sw_10_scaffold_9469 1 1660 bp 54.46 4.88 38.31
sw_10_scaffold_19283
Species: RIFOXYC2_FULL_RIF_IGX_35_21_curated (50%)
2 1024 bp 39.36 4.88 80.86
sw_10_scaffold_16082 1 1169 bp 39.44 4.88 42.09
sw_10_scaffold_16087
Species: Streptococcus sp. HSISM1 (100%)
1 1169 bp 38.67 4.88 99.83
sw_10_scaffold_5657
Phylum: Bacteroidetes (66.67%)
3 2297 bp 33.30 4.88 93.12
sw_10_scaffold_12702
Domain: Bacteria (50%)
4 2051 bp 52.75 4.88 69.77
sw_10_scaffold_12712 3 1372 bp 38.27 4.88 69.31
sw_10_scaffold_17840
Species: Halorubrum lipolyticum (100%)
1 1085 bp 61.29 4.88 85.71
sw_10_scaffold_18729
Species: Candidatus Nanosalina sp. J07AB43 (100%)
1 1046 bp 51.63 4.88 90.92
sw_10_scaffold_12371 2 1397 bp 58.05 4.87 97.07
sw_10_scaffold_15682
Species: Parcubacteria bacterium GW2011_GWA1_47_9 (50%)
2 1191 bp 51.39 4.87 90.43
sw_10_scaffold_17305 4 1109 bp 44.54 4.87 86.56
sw_10_scaffold_5638 3 2300 bp 52.26 4.87 51.91
sw_10_scaffold_18206 3 1068 bp 38.86 4.87 101.12
sw_10_scaffold_11554 5 1459 bp 46.88 4.87 100.34
sw_10_scaffold_12481
Domain: Archaea (50%)
4 1870 bp 40.96 4.87 71.39
sw_10_scaffold_8912 4 2218 bp 56.81 4.87 73.72
sw_10_scaffold_16863
Species: Haloquadratum sp. J07HQX50 (100%)
1 1129 bp 51.55 4.87 46.24
sw_10_scaffold_18707
Species: Halorhabdus utahensis (100%)
1 1047 bp 47.47 4.87 84.24
sw_10_scaffold_15293 1 1211 bp 41.37 4.87 99.83
sw_10_scaffold_7363
Species: Thioflavicoccus mobilis (100%)
1 1954 bp 45.29 4.86 99.95
sw_10_scaffold_16040
Species: Rhizophagus irregularis (50%)
2 1172 bp 28.33 4.86 80.38
sw_10_scaffold_39562 3 1111 bp 38.70 4.86 87.76
sw_10_scaffold_12615 1 1379 bp 52.94 4.86 59.83
sw_10_scaffold_5357 5 3310 bp 40.48 4.86 80.76
sw_10_scaffold_17720
Species: Emiliania huxleyi (100%)
1 1090 bp 50.64 4.86 61.10
sw_10_scaffold_18146 1 1071 bp 53.69 4.86 95.52
sw_10_scaffold_7242 4 1977 bp 29.08 4.86 93.93
Displaying items 16551-16600 of 17394 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.