ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 18.10 Longest contig: 206.16 Kbp Bin length: 36.83 Mbp GC content: 60.58 %

Contigs count: 13823 Features count: 48125 rRNAs count: 12 tRNAs count: 554

Genome completeness

megabin RP 48 / 55 MC: 40 BSCG 43 / 51 MC: 37 ASCG 38 / 38 MC: 38

Displaying items 401-450 of 13823 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_11_scaffold_18730 Species: Halovivax ruber (50%)	2	1560 bp	72.56	11.73	100.19
sw_11_scaffold_4160 Species: Natronomonas pharaonis (75%)	4	2605 bp	69.83	38.27	100.19
sw_11_scaffold_34211 Species: Halobacterium sp. DL1 (50%)	2	1045 bp	69.00	7.94	100.19
sw_11_scaffold_15242 Species: Natronomonas moolapensis (50%)	2	1045 bp	75.60	24.88	100.19
sw_11_scaffold_15063 Species: Haloarcula vallismortis (100%)	2	1054 bp	63.47	22.77	100.19
sw_11_scaffold_8608 Species: Spirosoma linguale (50%)	2	1584 bp	46.78	6.50	100.19
sw_11_scaffold_16129 Species: Halalkalicoccus jeotgali (50%)	2	1602 bp	57.30	6.55	100.19
sw_11_scaffold_14779 Species: Thioalkalivibrio sulfidiphilus (50%)	2	1069 bp	70.53	8.14	100.19
sw_11_scaffold_14709 Species: Thioalkalivibrio sulfidiphilus (50%)	2	1072 bp	71.74	8.30	100.19
sw_11_scaffold_14437 Species: Methylobacterium radiotolerans (50%)	2	1087 bp	73.97	12.60	100.18
sw_11_scaffold_14296 Species: RifOxyA12_full_Proteobacteria_58_15_curated (50%)	2	1096 bp	53.83	5.02	100.18
sw_11_scaffold_2318 Order: Haloferacales (50%)	4	3839 bp	70.07	17.58	100.18
sw_11_scaffold_3812	4	2767 bp	61.62	10.63	100.18
sw_11_scaffold_14073 Species: CG_Ignavi_01 (50%)	2	1111 bp	69.76	7.02	100.18
sw_11_scaffold_13855 Species: Haloterrigena limicola (100%)	2	1123 bp	68.66	12.56	100.18
sw_11_scaffold_13756 Species: Thiocystis violascens (50%)	2	1129 bp	69.00	7.44	100.18
sw_11_scaffold_4591 Species: Natrinema altunense (66.67%)	3	4519 bp	71.32	17.88	100.18
sw_11_scaffold_13611 Species: Halogranum salarium (50%)	2	1138 bp	64.32	11.42	100.18
sw_11_scaffold_15122 Species: Salinibacter ruber (50%)	2	1719 bp	69.98	9.48	100.18
sw_11_scaffold_13406 Species: Natronomonas moolapensis (50%)	2	1150 bp	69.39	20.26	100.17
sw_11_scaffold_3580 Order: Halobacteriales (100%)	4	2881 bp	71.02	18.33	100.17
sw_11_scaffold_13366 Species: Halosimplex carlsbadense (50%)	2	1153 bp	52.91	11.45	100.17
sw_11_scaffold_13297 Species: Acinetobacter phage vB_AbaM_Acibel004 (50%)	2	1156 bp	36.85	7.09	100.17
sw_11_scaffold_13303 Species: Natronomonas moolapensis (100%)	2	1156 bp	74.83	42.91	100.17
sw_11_scaffold_7556 Species: Natronomonas moolapensis (50%)	2	1737 bp	66.55	35.52	100.17
sw_11_scaffold_31547 Species: Halogeometricum pallidum (50%)	2	1171 bp	64.30	9.05	100.17
sw_11_scaffold_12931 Species: Halovirus HRTV-8 (100%)	2	1180 bp	54.49	4.07	100.17
sw_11_scaffold_12772 Species: Aneurinibacillus aneurinilyticus (50%)	2	1192 bp	56.88	5.87	100.17
sw_11_scaffold_12662 Species: Halosimplex carlsbadense (100%)	3	1198 bp	70.12	18.28	100.17
sw_11_scaffold_26915 Species: Natronococcus occultus (50%)	2	1198 bp	73.96	17.36	100.17
sw_11_scaffold_4712 Species: Haloferax sp. ATCC BAA-646 (50%)	2	2399 bp	69.74	10.42	100.17
sw_11_scaffold_26385 Species: Halobiforma lacisalsi (50%)	2	1204 bp	70.93	17.36	100.17
sw_11_scaffold_6848 Species: Natronomonas moolapensis (50%)	2	1863 bp	68.76	47.02	100.16
sw_11_scaffold_11875 Species: Halanaerobium hydrogeniformans (50%)	2	1252 bp	63.50	6.23	100.16
sw_11_scaffold_4361 Species: Halococcus thailandensis (50%)	2	2528 bp	67.05	53.16	100.16
sw_11_scaffold_14523 Species: Halogeometricum pallidum (50%)	2	1896 bp	76.85	33.65	100.16
sw_11_scaffold_10449 Species: Haloarcula marismortui (50%)	2	1896 bp	66.03	11.45	100.16
sw_11_scaffold_11694	2	1267 bp	42.54	7.50	100.16
sw_11_scaffold_14088 Species: Haloferax denitrificans (66.67%)	3	1914 bp	67.03	7.63	100.16
sw_11_scaffold_11352 Species: Natronomonas moolapensis (50%)	2	1923 bp	67.29	62.75	100.16
sw_11_scaffold_11279 Species: halophilic archaeon DL31 (100%)	2	1300 bp	69.38	9.38	100.15
sw_11_scaffold_11214 Species: halophilic archaeon DL31 (50%)	2	1306 bp	72.66	17.84	100.15
sw_11_scaffold_6334 Species: Halogeometricum pallidum (66.67%)	3	1962 bp	59.89	8.72	100.15
sw_11_scaffold_18706 Species: Halorubrum litoreum (66.67%)	3	1992 bp	67.12	10.34	100.15
sw_11_scaffold_10915 Order: Halobacteriales (100%)	3	1333 bp	66.99	12.53	100.15
sw_11_scaffold_20289 Species: Halomicrobium mukohataei (50%)	2	1348 bp	67.21	34.64	100.15
sw_11_scaffold_21640 Species: Halosimplex carlsbadense (50%)	2	1354 bp	72.90	18.76	100.15
sw_11_scaffold_22916	3	1369 bp	63.04	16.58	100.15
sw_11_scaffold_16328 Species: Halomicrobium mukohataei (50%)	2	1378 bp	68.58	17.05	100.15
sw_11_scaffold_6704 Species: Alicyclobacillus acidocaldarius (50%)	2	3463 bp	66.19	14.38	100.14

Displaying items 401-450 of 13823 in total

SW_11_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_11_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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