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13_1_40cm_4_scaffold_3428

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3428_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

3..287
DNA (285bp) protein (95aa)
Acyl carrier protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGG4_9BACT
putative acyl carrier protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative acyl carrier protein
13_1_40cm_4_scaffold_3428_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

280..1149
DNA (870bp) protein (290aa)
lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (EC:2.3.1.-); K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_1
lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGG5_9BACT
13_1_40cm_4_scaffold_3428_3
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(1363..2277)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJS9_9BACT
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AIE84908.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengis
13_1_40cm_4_scaffold_3428_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2299..3354)
DNA (1056bp) protein (352aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Beta-N-acetylglucosaminidase id=4708088 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
beta-N-acetylglucosaminidase
13_1_40cm_4_scaffold_3428_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3444..4691
DNA (1248bp) protein (416aa)
endoribonuclease L-PSP (EC:3.5.99.5) Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E7BAB
endoribonuclease L-PSP
13_1_40cm_4_scaffold_3428_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4725..5522)
DNA (798bp) protein (266aa)
Enoyl-CoA hydratase/isomerase id=4793456 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus metallidurans genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase Tax=GWA2_Rokubacteria_73_35_curated
enoyl-CoA hydratase
13_1_40cm_4_scaffold_3428_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5566..6186
DNA (621bp) protein (207aa)
Putative Nitroreductase family protein id=3995084 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_ANIW93N21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitroreductase Tax=GWA2_Rokubacteria_73_35_curated
nitroreductase
13_1_40cm_4_scaffold_3428_8
unknown

Not on your lists

6517..6606
DNA (90bp) protein (30aa)

This feature has no annotations

13_1_40cm_4_scaffold_3428_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6785..8371
DNA (1587bp) protein (529aa)
DNA polymerase III, subunit gamma/tau Tax=GWA2_Rokubacteria_73_35_curated
DNA polymerase III, subunit gamma/tau id=3995093 bin=GWA2_Methylomirabilis_73_35 species=Chlamydomonas reinhardtii genus=Chlamydomonas taxon_order=Chlamydomonadales taxon_class=Chlorophyceae phylum=Chlorophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3428_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8609..9538)
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ66_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67236.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingo
13_1_40cm_4_scaffold_3428_11
Beauveria bassiana, Beauveria, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

comp(9597..10121)
DNA (525bp) protein (175aa)
putative oxidoreductase (EC:1.-.-.-)
3-oxoacyl-ACP reductase n=1 Tax=Mycobacterium abscessus RepID=UPI00031EB899
Short chain dehydrogenase {ECO:0000313|EMBL:EJP64622.1}; TaxID=655819 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Cordycipitaceae;
13_1_40cm_4_scaffold_3428_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10147..10683
DNA (537bp) protein (179aa)
dinB superfamily protein
Uncharacterized protein id=4390124 bin=GWC2_Methylomirabilis_70_24 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_3428_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10917..11297)
DNA (381bp) protein (127aa)
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein id=14627935 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3428_14
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11692..13398)
DNA (1707bp) protein (569aa)
Aqualysin 1 n=1 Tax=gamma proteobacterium BDW918 RepID=I2JHE3_9GAMM
Aqualysin 1 {ECO:0000313|EMBL:EIF42395.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
peptidase
13_1_40cm_4_scaffold_3428_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13592..14524)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003770DDF
cyclase Tax=GWA2_Rokubacteria_73_35_curated
cyclase
13_1_40cm_4_scaffold_3428_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14580..15551
DNA (972bp) protein (324aa)
Putative uncharacterized protein id=3995087 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_3428_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15548..16915)
DNA (1368bp) protein (456aa)
putative UDP-N-acetylmuramate-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RBG_16_RIF_WS3X_71_46_curated
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0C4_9BACT id=5223295 bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_40cm_4_scaffold_3428_18
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(16912..18120)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW3_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
13_1_40cm_4_scaffold_3428_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18187..19011)
DNA (825bp) protein (275aa)
Lytic transglycosylase, catalytic id=3544309 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Lytic transglycosylase, catalytic Tax=GWA2_Rokubacteria_73_35_curated
soluble lytic murein transglycosylase-like protein
13_1_40cm_4_scaffold_3428_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19263..19592)
DNA (330bp) protein (110aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_3428_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19899..20894
DNA (996bp) protein (332aa)
tartrate dehydrogenase (EC:4.1.1.73); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tartrate dehydrogenase (EC:4.1.1.73)
Tartrate dehydrogenase id=4468110 bin=GWC2_Methylomirabilis_70_16 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3428_22
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20908..21543
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G1K2_9DELT
Uncharacterized protein {ECO:0000313|EMBL:AKF07995.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandara
13_1_40cm_4_scaffold_3428_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21554..22717)
DNA (1164bp) protein (388aa)
thiolase Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2961869 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium 888 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_3428_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(22714..23025)
DNA (312bp) protein (104aa)
Putative uncharacterized protein id=2961877 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium 888 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein; K07068 Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_3428_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23166..24473
DNA (1308bp) protein (436aa)
aminopeptidase (EC:3.4.13.9)
Putative aminopeptidase putative Proline or Methionine dipeptidase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z236_BRASO
peptidase M24 Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_3428_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24492..25262
DNA (771bp) protein (257aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative hydrolase or acyltransferase of alpha/beta superfamily id=2306562 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. WSM471 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3428_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(25171..26442)
DNA (1272bp) protein (424aa)
acyl-CoA dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
acyl-CoA dehydrogenase domain-containing protein id=14626979 bin=bin7_NC10_sister species=Novosphingobium sp. Rr 2-17 genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_4_scaffold_3428_28
unknown

Not on your lists

26715..27485
DNA (771bp) protein (257aa)

This feature has no annotations

13_1_40cm_4_scaffold_3428_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27579..28661
DNA (1083bp) protein (361aa)
hypothetical protein id=2395057 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_3428_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28742..29620)
DNA (879bp) protein (293aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2306543 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying items 1-30 of 33 in total

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