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13_1_40cm_4_scaffold_5135

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5135_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..755)
-----------------
DNA (753bp)
protein (251aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_5135_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(797..1723)
-----------------
DNA (927bp)
protein (309aa)
Type II secretory pathway component PulJ-like n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLC9_SYNFM
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_5135_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(1711..2079)
-----------------
DNA (369bp)
protein (123aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_5135_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2076..2528)
-----------------
DNA (453bp)
protein (151aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_5135_5
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(2790..3200)
-----------------
DNA (411bp)
protein (137aa)
Sigma-54 interaction domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHS4_CHLTF
sigma-54 interaction domain-containing protein
Sigma-54 interaction domain protein {ECO:0000313|EMBL:AEP10984.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermo
13_1_40cm_4_scaffold_5135_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(5747..7252)
-----------------
DNA (1506bp)
protein (502aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UH26_ANASK
transmembrane and TPR repeat-containing protein CG4341-like Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_5135_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(7249..8718)
-----------------
DNA (1470bp)
protein (490aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UH26_ANASK
transmembrane and TPR repeat-containing protein CG4341-like Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_4_scaffold_5135_8
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(8741..9880)
-----------------
DNA (1140bp)
protein (380aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
13_1_40cm_4_scaffold_5135_9
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10276..12315)
-----------------
DNA (2040bp)
protein (680aa)
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein id=24398918 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_4_scaffold_5135_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(12312..13049)
-----------------
DNA (738bp)
protein (246aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI0003617025
glycosyltransferase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glycosyl transferase family protein
13_1_40cm_4_scaffold_5135_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13049..13762)
-----------------
DNA (714bp)
protein (238aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
glycosyl transferase family protein id=16793547 bin=RBG_16_Aminicenantes_63_16_plus tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
putative pristinamycin I synthase 3
13_1_40cm_4_scaffold_5135_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14098..15471)
-----------------
DNA (1374bp)
protein (458aa)
NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9W9_GEMAT
NtrC family two-component response regulator Tax=GWC2_Gemmatimonadetes_71_10_curated
NtrC family two-component response regulator
13_1_40cm_4_scaffold_5135_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15468..16679)
-----------------
DNA (1212bp)
protein (404aa)
two-component histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Two-component histidine kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9X0_GEMAT
two-component histidine kinase
13_1_40cm_4_scaffold_5135_14
unknown

Not on your lists

17331..17927
-----------------
DNA (597bp)
protein (199aa)

This feature has no annotations

13_1_40cm_4_scaffold_5135_15
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17941..19131)
-----------------
DNA (1191bp)
protein (397aa)
Ribonucleotide reductase, beta subunit n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QF49_9FIRM
Ribonucleotide reductase, beta subunit {ECO:0000313|EMBL:EKP95566.1}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.
ribonucleotide reductase
13_1_40cm_4_scaffold_5135_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(19140..19595)
-----------------
DNA (456bp)
protein (152aa)
Type IV pilus assembly protein PilC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA12_GEMAT
pilC; type IV pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC Tax=GWC2_Gemmatimonadetes_71_10_curated
pilC; type IV pilus assembly protein PilC
13_1_40cm_4_scaffold_5135_17
unknown

Not on your lists

19679..19807
-----------------
DNA (129bp)
protein (43aa)

This feature has no annotations

13_1_40cm_4_scaffold_5135_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20332..21492)
-----------------
DNA (1161bp)
protein (387aa)
Twitching mobility protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA13_GEMAT
pilT; twitching mobility protein; K02669 twitching motility protein PilT Tax=RBG_16_Gemmatimonadetes_66_8_curated
pilT; twitching mobility protein
13_1_40cm_4_scaffold_5135_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21489..23225)
-----------------
DNA (1737bp)
protein (579aa)
pilB; type IV pilus biogenesis protein PilB; K02652 type IV pilus assembly protein PilB Tax=RBG_16_Gemmatimonadetes_66_8_curated
type II secretion system protein E
Type IV-A pilus assembly ATPase PilB id=2008269 bin=GWB2_Proteobacteria_55_19 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
13_1_40cm_4_scaffold_5135_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23305..23703)
-----------------
DNA (399bp)
protein (133aa)
Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Microbacterium RepID=H8E321_9MICO
competence protein ComEA-like protein with helix-hairpin-helix repeat region; K02237 competence protein ComEA Tax=RBG_16_Gemmatimonadetes_66_8_curated
comEA protein
13_1_40cm_4_scaffold_5135_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23893..24810)
-----------------
DNA (918bp)
protein (306aa)
hypothetical protein n=1 Tax=Armatimonadetes bacterium JGI 0000077-K19 RepID=UPI0003B4125B
peptidase M28 Tax=RBG_16_Gemmatimonadetes_66_8_curated
peptidase M28
13_1_40cm_4_scaffold_5135_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

24852..26387
-----------------
DNA (1536bp)
protein (512aa)
Permease YjgP/YjgQ family protein n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QMH3_CHLP8
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_4_scaffold_5135_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

26384..27475
-----------------
DNA (1092bp)
protein (364aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AA17_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
permease YjgP/YjgQ family protein
13_1_40cm_4_scaffold_5135_24
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(27494..28420)
-----------------
DNA (927bp)
protein (309aa)
Uncharacterized protein n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0ALS8_IGNAJ
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
Displaying 24 items

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