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13_1_40cm_4_scaffold_646

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_646_1
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(1..1413)
DNA (1413bp) protein (471aa)
1A family penicillin-binding protein (EC:2.4.1.129)
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:ABU58678.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ABU58678.1};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexin
Penicillin-binding protein, 1A family n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMB6_ROSCS
13_1_40cm_4_scaffold_646_2
unknown

Not on your lists

1436..2074
DNA (639bp) protein (213aa)

This feature has no annotations

13_1_40cm_4_scaffold_646_3
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(1960..2427)
DNA (468bp) protein (156aa)
solA; N-methyltryptophan oxidase (EC:1.5.3.1)
Sarcosine oxidase {ECO:0000313|EMBL:ABY36894.1}; EC=1.5.3.1 {ECO:0000313|EMBL:ABY36894.1};; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae;
Sarcosine oxidase n=2 Tax=Chloroflexus RepID=A9WBA1_CHLAA
13_1_40cm_4_scaffold_646_4
unknown

Not on your lists

comp(3356..3547)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_40cm_4_scaffold_646_5
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3598..4500)
DNA (903bp) protein (301aa)
transketolase n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00035FED85
transketolase subunit B
Putative transketolase B subunit {ECO:0000313|EMBL:EAU69607.1}; Transketolase B subunit {ECO:0000313|EMBL:ADO67865.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales
13_1_40cm_4_scaffold_646_6
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4497..5189)
DNA (693bp) protein (231aa)
Transketolase n=2 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=G8X0V8_STREN
fdx; transketolase
Transketolase {ECO:0000313|EMBL:AEW97347.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DS
13_1_40cm_4_scaffold_646_7
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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5244..5708
DNA (465bp) protein (155aa)
Redox-sensitive transcriptional activator SoxR n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09D44_STIAD
Transcriptional regulator {ECO:0000313|EMBL:KHL12486.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
soxR; redox-sensitive transcriptional activator
13_1_40cm_4_scaffold_646_8
unknown

Not on your lists

5775..6161
DNA (387bp) protein (129aa)

This feature has no annotations

13_1_40cm_4_scaffold_646_9
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

6389..7636
DNA (1248bp) protein (416aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
thrC; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] id=24406851 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
threonine synthase
13_1_40cm_4_scaffold_646_10
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

7633..9099
DNA (1467bp) protein (489aa)
GntR family transcriptional regulator (EC:2.6.1.39) Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
aspartate aminotransferase n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI0003130DA2
class I and II aminotransferase
13_1_40cm_4_scaffold_646_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

9115..10503
DNA (1389bp) protein (463aa)
isopropylmalate isomerase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=LEUC_ACIC1
13_1_40cm_4_scaffold_646_12
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10503..11090
DNA (588bp) protein (196aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000255|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01031}; Short=IPMI {ECO:00
3-isopropylmalate dehydratase small subunit n=1 Tax=Frankia sp. (strain EAN1pec) RepID=LEUD_FRASN
13_1_40cm_4_scaffold_646_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(11103..12677)
DNA (1575bp) protein (525aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein id=86755 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
13_1_40cm_4_scaffold_646_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

12759..13676
DNA (918bp) protein (306aa)
Putative F420-dependent oxidoreductase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TUB3_9CHLR
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
putative oxidoreductase
13_1_40cm_4_scaffold_646_15
unknown

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13715..13855
DNA (141bp) protein (47aa)

This feature has no annotations

13_1_40cm_4_scaffold_646_16
unknown

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comp(13999..14130)
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_4_scaffold_646_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(14189..14494)
DNA (306bp) protein (102aa)
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_cur
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] id=24577507 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
3-isopropylmalate dehydratase large subunit
13_1_40cm_4_scaffold_646_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14580..16199)
DNA (1620bp) protein (540aa)
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RBG_16_RIF_WS3X_71_46_curated
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Aquifex aeolicus (strain VF5) RepID=LEUC_AQUAE id=5224304 bin=16ft_combo_ws3_JS1 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_40cm_4_scaffold_646_19
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

16251..16517
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Streptomyces sp. HmicA12 RepID=UPI0003644F80
hypothetical protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
hypothetical protein
13_1_40cm_4_scaffold_646_20
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16514..17425)
DNA (912bp) protein (304aa)
MarR family transcriptional regulator with acetyltransferase activity n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YC29_9RHIZ
MarR family transcriptional regulator with acetyltransferase activity {ECO:0000313|EMBL:EHH10703.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriace
MarR family transcriptional regulator with acetyltransferase activity
13_1_40cm_4_scaffold_646_21
Streptomyces clavuligerus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17464..18108)
DNA (645bp) protein (215aa)
Beta-lactamase domain-containing protein n=2 Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=B5H121_STRC2
Beta-lactamase domain protein {ECO:0000313|EMBL:EFG04666.2}; TaxID=443255 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces clavuligerus (str
putative hydrolase
13_1_40cm_4_scaffold_646_22
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

18202..19143
DNA (942bp) protein (314aa)
Putative membrane protein n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LDI7_9ACTO
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
membrane protein
13_1_40cm_4_scaffold_646_23
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(19428..20642)
DNA (1215bp) protein (405aa)
leuA3; 2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
2-isopropylmalate synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 id=5224560 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
2-isopropylmalate synthase
13_1_40cm_4_scaffold_646_24
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(20705..21856)
DNA (1152bp) protein (384aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_646_25
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(21840..22880)
DNA (1041bp) protein (347aa)
3-methyl-2-oxobutanoate dehydrogenase (EC:1.2.4.4); K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
3-methyl-2-oxobutanoate dehydrogenase (EC:1.2.4.4)
2-oxoisovalerate dehydrogenase subunit alpha n=1 Tax=Bacillus cereus BAG6X1-2 RepID=J8B0Y6_BACCE
13_1_40cm_4_scaffold_646_26
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(22888..23388)
DNA (501bp) protein (167aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_4_scaffold_646_27
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(23403..24275)
DNA (873bp) protein (291aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B0Y1_HERA2
3-hydroxybutyryl-CoA dehydrogenase
13_1_40cm_4_scaffold_646_28
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

24371..24850
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Streptomyces sp. AA1529 RepID=UPI00030F0F02
2Fe-2S iron-sulfur cluster binding domain-containing protein; K13483 xanthine dehydrogenase YagT iron-sulfur-binding subunit Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
[2Fe-2S]-binding domain-containing protein
13_1_40cm_4_scaffold_646_29
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

24850..27141
DNA (2292bp) protein (764aa)
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQG5_9BACT
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding {ECO:0000313|EMBL:BAL58401.1}; TaxID=1446466 species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetother
aldehyde oxidase
13_1_40cm_4_scaffold_646_30
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27138..28109
DNA (972bp) protein (324aa)
coxM; putative aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
oxidoreductase id=8266949 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
FAD-binding molybdopterin dehydrogenase
Displaying items 1-30 of 33 in total

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