ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.38 Longest contig: 107.01 Kbp Bin length: 675.45 Mbp GC content: 62.23 %

Contigs count: 297285 Features count: 898841 rRNAs count: 64 tRNAs count: 5904

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 297101-297150 of 297285 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_4_scaffold_251254 Domain: Bacteria (66.67%)	3	1020 bp	63.82	4.56	110.59
13_1_40cm_4_scaffold_238323 Species: RBG_16_Chloroflexi_57_8_curated (50%)	2	1066 bp	71.76	3.80	110.60
13_1_40cm_4_scaffold_297735 Species: RifOxyA12_full_Proteobacteria_58_15_curated (50%)	2	1196 bp	65.72	5.14	110.62
13_1_40cm_4_scaffold_174155 Species: uncultured bacterium (50%)	2	1293 bp	63.81	15.31	110.67
13_1_40cm_4_scaffold_202455 Species: GWA2_RIF03_38_11_curated (50%)	2	1192 bp	72.73	2.01	110.74
13_1_40cm_4_scaffold_208910 Species: uncultured bacterium (50%)	2	1170 bp	71.28	1.79	110.77
13_1_40cm_4_scaffold_220036 Species: Bradyrhizobium diazoefficiens (50%)	2	1132 bp	63.78	1.46	110.78
13_1_40cm_4_scaffold_278521 Species: RLO_Betaproteobacteria_68_20 (66.67%)	3	1462 bp	66.76	5.54	110.81
13_1_40cm_4_scaffold_230754 Domain: Bacteria (66.67%)	3	1505 bp	61.46	2.69	110.83
13_1_40cm_4_scaffold_328027 Species: R_Acidobacteria_68_18 (50%)	2	1299 bp	65.13	8.43	110.85
13_1_40cm_4_scaffold_142035 Species: RBG_13_Deltaproteobacteria_61_14_curated (50%)	2	1436 bp	71.31	4.39	110.93
13_1_40cm_4_scaffold_437181 Species: uncultured bacterium (50%)	2	1149 bp	71.11	3.26	110.97
13_1_40cm_4_scaffold_225753 Species: Leptothrix cholodnii (100%)	2	1111 bp	69.67	2.30	110.98
13_1_40cm_4_scaffold_314045	2	1138 bp	66.96	2.50	110.98
13_1_40cm_4_scaffold_456107	3	1162 bp	59.72	2.97	111.02
13_1_40cm_4_scaffold_424403 Species: RBG_16_Planctomycetes_43_13_curated (50%)	2	1251 bp	50.36	11.15	111.03
13_1_40cm_4_scaffold_212156 Species: RBG_16_Acidobacteria_70_10_curated (50%)	2	1159 bp	66.18	7.64	111.04
13_1_40cm_4_scaffold_120858 Domain: Bacteria (50%)	4	1556 bp	68.64	2.60	111.05
13_1_40cm_4_scaffold_464662 Domain: Bacteria (75%)	4	1040 bp	61.15	2.74	111.06
13_1_40cm_4_scaffold_165197 Species: Candidatus Nitrososphaera gargensis (50%)	2	1329 bp	61.40	2.71	111.06
13_1_40cm_4_scaffold_349263 Species: Candidatus Koribacter versatilis (50%)	2	1337 bp	61.26	3.70	111.07
13_1_40cm_4_scaffold_334204 Domain: Bacteria (66.67%)	3	1064 bp	65.51	2.26	111.09
13_1_40cm_4_scaffold_474894 Domain: Bacteria (66.67%)	3	1539 bp	66.21	3.41	111.11
13_1_40cm_4_scaffold_232070	3	1088 bp	65.17	2.90	111.12
13_1_40cm_4_scaffold_244791	3	1042 bp	67.66	8.21	111.13
13_1_40cm_4_scaffold_178862	4	1275 bp	66.67	3.06	111.14
13_1_40cm_4_scaffold_293317 Domain: Bacteria (100%)	3	2180 bp	66.10	3.39	111.19
13_1_40cm_4_scaffold_263283 Genus: Candidatus Entotheonella (50%)	4	1373 bp	61.84	2.40	111.22
13_1_40cm_4_scaffold_653658 Species: Burkholderia pseudomallei (50%)	2	1006 bp	67.69	1.49	111.23
13_1_40cm_4_scaffold_277144 Species: marine sediment metagenome (50%)	2	1674 bp	67.92	2.24	111.29
13_1_40cm_4_scaffold_214032 Species: Candidatus Entotheonella sp. TSY1 (50%)	2	1153 bp	57.42	7.16	111.36
13_1_40cm_4_scaffold_366123 Species: R_OD1_Giovannonibacteria_43_16 (50%)	2	1263 bp	59.30	6.82	111.40
13_1_40cm_4_scaffold_275989 Species: Sulfurihydrogenibium azorense (50%)	2	1473 bp	67.21	2.85	111.41
13_1_40cm_4_scaffold_202891	4	1190 bp	63.11	2.27	111.43
13_1_40cm_4_scaffold_198194	3	1206 bp	57.96	1.99	111.44
13_1_40cm_4_scaffold_245891 Species: GWC2_Pelobacteraceae_58_13_curated (50%)	2	1564 bp	60.87	3.55	111.45
13_1_40cm_4_scaffold_546336 Species: RBG_13_OP11_40_7b_curated (50%)	2	1017 bp	70.60	2.21	111.50
13_1_40cm_4_scaffold_233689 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	1608 bp	67.72	2.33	111.57
13_1_40cm_4_scaffold_302590 Species: R_NC10_66_22 (50%)	2	1441 bp	67.38	1.87	111.59
13_1_40cm_4_scaffold_254654 Species: uncultured Thiohalocapsa sp. PB-PSB1 (50%)	2	1008 bp	70.04	4.17	111.61
13_1_40cm_4_scaffold_217108 Species: Hyphomicrobium denitrificans (50%)	2	1142 bp	68.04	2.10	111.65
13_1_40cm_4_scaffold_155072 Species: RBG_16_RIF03_38_10_curated (50%)	2	1373 bp	61.69	3.50	111.65
13_1_40cm_4_scaffold_256352	2	1002 bp	52.10	5.09	111.68
13_1_40cm_4_scaffold_170264 Species: Caldilinea aerophila (50%)	2	1308 bp	70.49	1.61	111.70
13_1_40cm_4_scaffold_242538 Species: Chthoniobacter flavus (50%)	2	1050 bp	50.48	2.00	111.71
13_1_40cm_4_scaffold_403765 Species: Micromonospora aurantiaca (50%)	2	1109 bp	67.99	2.57	111.72
13_1_40cm_4_scaffold_378642 Species: Burkholderia pseudomallei (50%)	2	1079 bp	57.92	2.92	111.77
13_1_40cm_4_scaffold_313475 Species: uncultured archaeon (50%)	2	1379 bp	58.30	8.92	111.82
13_1_40cm_4_scaffold_261010 Species: Pseudogymnoascus pannorum (50%)	2	1424 bp	68.26	7.48	111.87
13_1_40cm_4_scaffold_237069 Species: Desulfotomaculum kuznetsovii (50%)	2	1070 bp	61.31	2.38	111.87

Displaying items 297101-297150 of 297285 in total

13_1_40cm_4_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_4_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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