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13_1_40cm_4_UNK

In projects: 13_1_40CM_4  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.38 Longest contig: 107.01 Kbp Bin length: 675.45 Mbp GC content: 62.23 %
Contigs count: 297285 Features count: 898841 rRNAs count: 64 tRNAs count: 5904

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 297151-297200 of 297285 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_4_scaffold_249766
Species: R_Rokubacteria_68_19 (50%)
2 1024 bp 61.23 2.49 111.91
13_1_40cm_4_scaffold_584849
Species: Pyrinomonas methylaliphatogenes (50%)
2 1048 bp 53.24 2.29 111.93
13_1_40cm_4_scaffold_232129
Species: RLO_Rokubacteria_71_22 (50%)
2 1088 bp 66.27 7.86 111.95
13_1_40cm_4_scaffold_388256
Species: Kyrpidia tusciae (50%)
2 1294 bp 71.25 2.90 111.98
13_1_40cm_4_scaffold_138115
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1457 bp 67.33 2.16 112.01
13_1_40cm_4_scaffold_242019
Species: Mycobacterium xenopi (50%)
2 1052 bp 67.87 3.99 112.07
13_1_40cm_4_scaffold_249645
Species: uncultured Acidobacteria bacterium (50%)
2 1025 bp 70.54 3.22 112.10
13_1_40cm_4_scaffold_410123
Species: GWC2_Rokubacteria_70_16_curated (50%)
2 1164 bp 62.11 1.80 112.11
13_1_40cm_4_scaffold_308430 2 1327 bp 64.05 1.92 112.13
13_1_40cm_4_scaffold_209429
Species: RLO_Betaproteobacteria_65_14 (50%)
2 1168 bp 68.24 2.05 112.24
13_1_40cm_4_scaffold_214974 3 1149 bp 67.54 2.74 112.27
13_1_40cm_4_scaffold_244813
Species: R_Betaproteobacteria_64_12 (50%)
2 1042 bp 58.25 2.59 112.28
13_1_40cm_4_scaffold_355507
Species: R_Acidobacteria_67_21 (50%)
2 1269 bp 68.87 1.89 112.29
13_1_40cm_4_scaffold_308389
Domain: Bacteria (66.67%)
3 1349 bp 57.60 2.45 112.31
13_1_40cm_4_scaffold_268874
Species: uncultured bacterium (50%)
2 1365 bp 56.56 2.64 112.31
13_1_40cm_4_scaffold_148198
Species: Candidatus Methylomirabilis oxyfera (50%)
2 1405 bp 70.32 2.14 112.31
13_1_40cm_4_scaffold_244372 2 1044 bp 54.50 7.90 112.36
13_1_40cm_4_scaffold_235401
Species: Afipia felis (50%)
2 1076 bp 59.94 3.49 112.36
13_1_40cm_4_scaffold_132540
Phylum: Actinobacteria (66.67%)
3 1487 bp 64.96 3.93 112.37
13_1_40cm_4_scaffold_247449
Species: Rhizobium sp. CF080 (50%)
2 1033 bp 66.89 2.32 112.39
13_1_40cm_4_scaffold_288303
Species: GWF1_Rhodobacteraceae_65_7_curated (50%)
2 1564 bp 62.15 35.49 112.40
13_1_40cm_4_scaffold_147475 3 1409 bp 57.42 2.13 112.42
13_1_40cm_4_scaffold_321827
Species: R_Acidobacteria_67_28 (50%)
2 1211 bp 58.30 2.61 112.47
13_1_40cm_4_scaffold_466605
Species: Myxococcus sp. (contaminant ex DSM 436) (50%)
2 1144 bp 73.69 1.31 112.50
13_1_40cm_4_scaffold_159212 3 1354 bp 69.94 3.21 112.56
13_1_40cm_4_scaffold_165013
Species: Gemmatimonadetes bacterium KBS708 (66.67%)
3 1330 bp 65.41 4.17 112.56
13_1_40cm_4_scaffold_172802 2 1298 bp 65.79 1.62 112.56
13_1_40cm_4_scaffold_220523
Species: GWC2_Rokubacteria_70_16_curated (50%)
2 1130 bp 66.37 1.86 112.57
13_1_40cm_4_scaffold_224863 7 1114 bp 62.30 2.56 112.57
13_1_40cm_4_scaffold_338972
Species: Chthoniobacter flavus (50%)
2 1247 bp 58.38 2.41 112.59
13_1_40cm_4_scaffold_243905
Species: RIFOXYD2_FULL_WWE3_43_10_curated (50%)
2 1556 bp 66.26 2.60 112.60
13_1_40cm_4_scaffold_552708
Species: Sandaracinus amylolyticus (50%)
2 1055 bp 69.19 3.84 112.61
13_1_40cm_4_scaffold_373477
Species: Cupriavidus pinatubonensis (50%)
2 1236 bp 70.39 2.67 112.62
13_1_40cm_4_scaffold_387160 3 1236 bp 62.70 1.82 112.62
13_1_40cm_4_scaffold_393535 3 1100 bp 57.64 2.73 112.64
13_1_40cm_4_scaffold_187989
Species: Thiobacillus prosperus (50%)
2 1241 bp 69.22 3.87 112.65
13_1_40cm_4_scaffold_228132
Phylum: Acidobacteria (50%)
4 1102 bp 59.35 3.13 112.70
13_1_40cm_4_scaffold_143478 4 1429 bp 66.97 6.30 112.74
13_1_40cm_4_scaffold_364657
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1482 bp 69.03 24.70 112.75
13_1_40cm_4_scaffold_415135
Domain: Bacteria (50%)
4 1761 bp 68.26 5.45 112.78
13_1_40cm_4_scaffold_256955
Species: Ktedonobacter racemifer (50%)
2 1000 bp 60.60 2.70 112.80
13_1_40cm_4_scaffold_135142
Species: Anabaena cylindrica (50%)
2 1473 bp 67.89 5.80 112.83
13_1_40cm_4_scaffold_207397
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 1175 bp 66.30 2.81 112.85
13_1_40cm_4_scaffold_305333
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (66.67%)
3 1337 bp 65.82 2.02 112.87
13_1_40cm_4_scaffold_446843 3 1099 bp 64.42 2.87 112.92
13_1_40cm_4_scaffold_226816 3 1477 bp 52.47 10.56 112.93
13_1_40cm_4_scaffold_354648
Domain: Bacteria (100%)
3 1418 bp 70.03 2.12 112.98
13_1_40cm_4_scaffold_534653
Species: RLO_Nitrospinae_39_16 (50%)
2 1070 bp 69.35 2.80 112.99
13_1_40cm_4_scaffold_240650
Species: RBG_19FT_COMBO_Aminicenantes_58_17_curated (50%)
2 1529 bp 56.90 3.63 113.02
13_1_40cm_4_scaffold_444091
Species: Chthoniobacter flavus (50%)
2 1136 bp 57.04 2.11 113.03
Displaying items 297151-297200 of 297285 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.