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13_1_40cm_4_UNK

In projects: 13_1_40CM_4  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.38 Longest contig: 107.01 Kbp Bin length: 675.45 Mbp GC content: 62.23 %
Contigs count: 297285 Features count: 898841 rRNAs count: 64 tRNAs count: 5904

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 651-700 of 297285 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_4_scaffold_450190
Species: Chondromyces apiculatus (50%)
2 1041 bp 71.57 4.03 105.76
13_1_40cm_4_scaffold_482898
Domain: Bacteria (66.67%)
3 1163 bp 67.76 1.81 105.76
13_1_40cm_4_scaffold_220777
Species: Thiocystis violascens (50%)
2 1129 bp 54.47 1.46 105.76
13_1_40cm_4_scaffold_185354 3 1251 bp 61.55 1.44 105.76
13_1_40cm_4_scaffold_377132
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 1234 bp 71.96 12.88 105.75
13_1_40cm_4_scaffold_456485
Species: Pyrinomonas methylaliphatogenes (50%)
2 1044 bp 66.09 3.45 105.75
13_1_40cm_4_scaffold_248901
Species: R_Acidobacteria_68_18 (50%)
2 1027 bp 65.82 2.48 105.75
13_1_40cm_4_scaffold_580670
Domain: Bacteria (100%)
3 1027 bp 53.94 1.61 105.75
13_1_40cm_4_scaffold_279527 3 1603 bp 53.59 4.21 105.74
13_1_40cm_4_scaffold_121547
Species: RLO_RIF_CHLX_71_12 (50%)
2 1552 bp 66.95 5.12 105.74
13_1_40cm_4_scaffold_267855
Phylum: Rokubacteria (66.67%)
3 1413 bp 70.56 17.76 105.73
13_1_40cm_4_scaffold_57909
Class: Actinobacteria (66.67%)
3 2236 bp 63.64 5.64 105.73
13_1_40cm_4_scaffold_171331
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)
2 1782 bp 62.46 2.69 105.72
13_1_40cm_4_scaffold_165380
Species: Myxococcus stipitatus (50%)
2 1328 bp 75.08 7.23 105.72
13_1_40cm_4_scaffold_228410
Species: R_Ignavibacteria_55_14 (50%)
2 1101 bp 52.50 1.50 105.72
13_1_40cm_4_scaffold_331661 2 1294 bp 65.53 2.32 105.72
13_1_40cm_4_scaffold_149334 3 1399 bp 65.83 2.79 105.72
13_1_40cm_4_scaffold_319941
Domain: Bacteria (66.67%)
3 1558 bp 54.69 4.72 105.71
13_1_40cm_4_scaffold_222893
Species: Herpetosiphon aurantiacus (50%)
2 1121 bp 69.13 2.81 105.71
13_1_40cm_4_scaffold_203423
Species: Saccharopolyspora rectivirgula (50%)
2 1561 bp 64.06 5.51 105.70
13_1_40cm_4_scaffold_624875
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated (50%)
2 1019 bp 59.08 2.50 105.69
13_1_40cm_4_scaffold_407504
Species: Desulfovibrio sp. FW1012B (50%)
2 1002 bp 57.78 3.29 105.69
13_1_40cm_4_scaffold_38606
Species: Methylobacterium extorquens (50%)
2 3236 bp 63.16 2.87 105.69
13_1_40cm_4_scaffold_458643
Species: Candidatus Solibacter usitatus (100%)
2 1073 bp 62.07 3.22 105.69
13_1_40cm_4_scaffold_211517 3 1161 bp 52.63 2.71 105.69
13_1_40cm_4_scaffold_163324
Phylum: Actinobacteria (50%)
4 1337 bp 59.39 1.80 105.68
13_1_40cm_4_scaffold_354134
Domain: Bacteria (75%)
4 1181 bp 66.13 4.06 105.67
13_1_40cm_4_scaffold_255570
Species: GWC2_Geobacteraceae_58_44_curated (50%)
2 1005 bp 61.79 2.99 105.67
13_1_40cm_4_scaffold_235322
Species: Ralstonia solanacearum (50%)
2 1076 bp 62.08 2.37 105.67
13_1_40cm_4_scaffold_189707
Species: Candidatus Koribacter versatilis (100%)
2 1235 bp 56.52 9.96 105.67
13_1_40cm_4_scaffold_244807
Species: RBG_16_Betaproteobacteria_64_18_curated (66.67%)
3 1042 bp 63.05 8.49 105.66
13_1_40cm_4_scaffold_81533
Phylum: Acidobacteria (50%)
4 1891 bp 56.80 2.22 105.66
13_1_40cm_4_scaffold_330963
Species: Chthoniobacter flavus (50%)
2 1062 bp 60.26 2.54 105.65
13_1_40cm_4_scaffold_244067
Species: RBG_13_Deltaproteobacteria_51_10_curated (50%)
2 1045 bp 55.79 3.73 105.65
13_1_40cm_4_scaffold_248611
Species: Sorangium cellulosum (50%)
2 1028 bp 51.07 2.33 105.64
13_1_40cm_4_scaffold_315295
Species: marine sediment metagenome (50%)
2 1880 bp 61.44 7.83 105.64
13_1_40cm_4_scaffold_519964
Species: Coleofasciculus chthonoplastes (50%)
2 1048 bp 65.08 3.01 105.63
13_1_40cm_4_scaffold_597125
Species: Chthoniobacter flavus (100%)
2 1031 bp 52.57 2.04 105.63
13_1_40cm_4_scaffold_51813
Species: RLO_Gemmatimonadetes_68_9 (75%)
4 3485 bp 65.28 4.99 105.62
13_1_40cm_4_scaffold_144511
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)
2 1423 bp 73.51 2.85 105.62
13_1_40cm_4_scaffold_383170
Domain: Bacteria (66.67%)
3 1210 bp 70.17 3.22 105.62
13_1_40cm_4_scaffold_248599
Class: Betaproteobacteria (100%)
3 1514 bp 63.41 3.96 105.61
13_1_40cm_4_scaffold_471104
Species: Parvibaculum lavamentivorans (50%)
2 1051 bp 67.75 2.14 105.61
13_1_40cm_4_scaffold_242216
Species: Pedosphaera parvula (50%)
2 1051 bp 57.18 3.14 105.61
13_1_40cm_4_scaffold_353513
Domain: Bacteria (66.67%)
3 1480 bp 53.11 1.82 105.61
13_1_40cm_4_scaffold_303604
Species: Opitutus terrae (50%)
2 1017 bp 64.01 3.54 105.60
13_1_40cm_4_scaffold_166825 5 1821 bp 47.06 1.48 105.60
13_1_40cm_4_scaffold_206152
Species: Nitrolancea hollandica (50%)
2 1179 bp 64.38 2.16 105.60
13_1_40cm_4_scaffold_146766
Domain: Bacteria (66.67%)
3 1412 bp 54.11 1.17 105.60
13_1_40cm_4_scaffold_552815
Species: Candidatus Nitrososphaera evergladensis (100%)
2 1037 bp 40.50 1.88 105.59
Displaying items 651-700 of 297285 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.