ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.38 Longest contig: 107.01 Kbp Bin length: 675.45 Mbp GC content: 62.23 %

Contigs count: 297285 Features count: 898841 rRNAs count: 64 tRNAs count: 5904

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 701-750 of 297285 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_4_scaffold_180143 Domain: Bacteria (66.67%)	3	1270 bp	71.02	1.65	105.59
13_1_40cm_4_scaffold_316317 Species: R_Acidobacteria_65_29 (50%)	2	1307 bp	67.64	2.75	105.59
13_1_40cm_4_scaffold_225875 Species: Rhodopseudomonas palustris (66.67%)	3	1111 bp	65.35	1.76	105.58
13_1_40cm_4_scaffold_149624 Phylum: Gemmatimonadetes (66.67%)	3	1398 bp	69.81	28.97	105.58
13_1_40cm_4_scaffold_520249	3	1094 bp	64.63	2.74	105.58
13_1_40cm_4_scaffold_510175 Species: Burkholderia sp. MSHR3999 (50%)	2	1094 bp	53.20	2.19	105.58
13_1_40cm_4_scaffold_325993 Species: Eimeria necatrix (50%)	2	1938 bp	76.73	15.13	105.57
13_1_40cm_4_scaffold_236433 Phylum: Proteobacteria (66.67%)	3	1705 bp	72.67	12.23	105.57
13_1_40cm_4_scaffold_239787 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1060 bp	71.51	8.49	105.57
13_1_40cm_4_scaffold_420921 Domain: Bacteria (66.67%)	3	1080 bp	70.83	1.67	105.56
13_1_40cm_4_scaffold_219399	2	1134 bp	60.05	2.12	105.56
13_1_40cm_4_scaffold_189947 Species: Pedosphaera parvula (50%)	4	1819 bp	55.03	2.23	105.55
13_1_40cm_4_scaffold_243765 Species: Anaerolinea thermophila (50%)	2	1046 bp	68.07	19.93	105.55
13_1_40cm_4_scaffold_332223 Species: Spirochaeta smaragdinae (50%)	2	1083 bp	52.82	2.08	105.54
13_1_40cm_4_scaffold_280362 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (75%)	4	1481 bp	67.72	3.04	105.54
13_1_40cm_4_scaffold_143876 Domain: Bacteria (66.67%)	3	1427 bp	62.09	2.94	105.54
13_1_40cm_4_scaffold_253431 Species: Frankia sp. BMG5.23 (50%)	2	1012 bp	63.93	9.63	105.53
13_1_40cm_4_scaffold_227843 Phylum: Rokubacteria (66.67%)	3	1103 bp	69.81	13.19	105.53
13_1_40cm_4_scaffold_504947 Species: R_Rokubacteria_73_56 (50%)	2	1103 bp	72.53	2.99	105.53
13_1_40cm_4_scaffold_107863 Species: Ktedonobacter racemifer (66.67%)	3	1646 bp	53.28	2.73	105.53
13_1_40cm_4_scaffold_505511 Species: Pyrinomonas methylaliphatogenes (100%)	2	1086 bp	52.76	3.87	105.53
13_1_40cm_4_scaffold_200822 Domain: Bacteria (100%)	3	1197 bp	64.41	3.26	105.51
13_1_40cm_4_scaffold_526359 Species: Gemmatimonas aurantiaca (66.67%)	3	1052 bp	60.74	2.99	105.51
13_1_40cm_4_scaffold_179922 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)	2	1271 bp	55.23	2.71	105.51
13_1_40cm_4_scaffold_58069 Domain: Bacteria (85.71%)	7	3941 bp	67.85	5.71	105.51
13_1_40cm_4_scaffold_387011 Species: Pyrinomonas methylaliphatogenes (50%)	2	1254 bp	50.16	1.91	105.50
13_1_40cm_4_scaffold_93753 Domain: Bacteria (50%)	4	1763 bp	69.31	4.17	105.50
13_1_40cm_4_scaffold_601779 Species: CG_Arma_01 (50%)	2	1018 bp	64.24	2.06	105.50
13_1_40cm_4_scaffold_142719	3	1928 bp	65.09	2.49	105.50
13_1_40cm_4_scaffold_432367 Species: Actinoplanes sp. SE50/110 (50%)	2	1055 bp	67.77	5.55	105.50
13_1_40cm_4_scaffold_240455 Species: uncultured bacterium (50%)	2	1058 bp	54.16	2.98	105.48
13_1_40cm_4_scaffold_412805	3	1004 bp	63.35	3.29	105.48
13_1_40cm_4_scaffold_585705	3	1004 bp	63.15	2.99	105.48
13_1_40cm_4_scaffold_151691 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1388 bp	71.47	9.29	105.48
13_1_40cm_4_scaffold_158560 Species: Chloroflexus aurantiacus (50%)	2	1900 bp	68.74	2.76	105.47
13_1_40cm_4_scaffold_225376 Species: RBG_16_Chloroflexi_58_14_curated (50%)	2	1334 bp	69.94	3.15	105.47
13_1_40cm_4_scaffold_249986 Species: R_Burkholderiales_61_11 (50%)	2	1024 bp	61.23	1.46	105.47
13_1_40cm_4_scaffold_234095 Species: RLO_RIF_CHLX_71_12 (100%)	2	1081 bp	66.60	3.61	105.46
13_1_40cm_4_scaffold_186810 Domain: Bacteria (66.67%)	3	1246 bp	55.86	2.05	105.46
13_1_40cm_4_scaffold_583221 Species: Stigmatella aurantiaca (50%)	2	1027 bp	72.64	2.92	105.45
13_1_40cm_4_scaffold_522592 Class: Deltaproteobacteria (66.67%)	3	1064 bp	66.45	3.38	105.45
13_1_40cm_4_scaffold_181085 Species: Candidatus Solibacter usitatus (50%)	2	1266 bp	57.27	1.78	105.45
13_1_40cm_4_scaffold_484897 Species: RBG_16_RIF_WS3X_71_46_curated (100%)	2	1101 bp	64.58	1.63	105.45
13_1_40cm_4_scaffold_248197 Phylum: Proteobacteria (66.67%)	3	1030 bp	64.95	3.93	105.44
13_1_40cm_4_scaffold_441631 Species: Thermofilum sp. 1910b (50%)	2	1067 bp	50.05	7.03	105.44
13_1_40cm_4_scaffold_406704 Species: Rhodothermus marinus (50%)	2	1050 bp	72.95	11.43	105.43
13_1_40cm_4_scaffold_89195 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated (50%)	2	1807 bp	66.74	3.15	105.42
13_1_40cm_4_scaffold_131492 Species: Sphaerobacter thermophilus (50%)	2	1494 bp	55.96	4.12	105.42
13_1_40cm_4_scaffold_594301 Species: marine sediment metagenome (50%)	2	1033 bp	49.47	1.45	105.42
13_1_40cm_4_scaffold_119058 Species: Candidatus Accumulibacter sp. SK-01 (50%)	2	1568 bp	69.01	2.30	105.42

Displaying items 701-750 of 297285 in total

13_1_40cm_4_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_4_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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