Alias: ACD20_40617.48787.13
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD20_9_1
uncultured bacterium, Bacteria
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Not on your lists |
627..1937
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MiaB-like tRNA modifying enzyme n=1 Tax=Geobacter sp. FRC-32 RepID=B9M869_GEOSF (db=UNIREF evalue=3.0e-109 bit_score=399.0 identity=45.16 coverage=97.7116704805492)
MiaB-like tRNA modifying enzyme
MiaB-like tRNA modifying enzyme
MOAA_NIFB_PQQE (db=PatternScan db_id=PS01305 from=150 to=161 evalue=0.0 interpro_id=IPR000385 interpro_description=MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: metal ion binding (GO:0046872), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
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ACD20_9_2
uncultured bacterium, Bacteria
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Not on your lists |
2042..2665
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ATP-dependent Clp protease proteolytic subunit n=2 Tax=Nostocaceae RepID=D4THW4_9NOST (db=UNIREF evalue=7.0e-78 bit_score=293.0 identity=68.02 coverage=94.2307692307692)
ATP-dependent Clp protease, proteolytic subunit ClpP
coiled-coil (db=Coil db_id=coil from=142 to=163 evalue=NA)
CLP_PROTEASE_HIS (db=PatternScan db_id=PS00382 from=118 to=131 evalue=0.0 interpro_id=IPR018215 interpro_description=Peptidase S14, ClpP, active site GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
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ACD20_9_3
uncultured bacterium, Bacteria
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Not on your lists |
comp(4577..5839)
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LL-diaminopimelate aminotransferase
AA_TRANSFER_CLASS_1 (db=PatternScan db_id=PS00105 from=260 to=273 evalue=0.0 interpro_id=IPR004838 interpro_description=Aminotransferases, class-I, pyridoxal-phosphate-binding site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: biosynthetic process (GO:0009058), Molecular Function: pyridoxal phosphate binding (GO:0030170))
AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751:SF33 from=59 to=413 evalue=4.7e-127)
SUBGROUP I AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751 from=59 to=413 evalue=4.7e-127)
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ACD20_9_4
uncultured bacterium, Bacteria
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Not on your lists |
6182..6598
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ribosomal subunit interface protein
seg (db=Seg db_id=seg from=91 to=101)
seg (db=Seg db_id=seg from=119 to=138)
Ribosome binding protein Y (YfiA homologue) (db=superfamily db_id=SSF69754 from=2 to=118 evalue=3.2e-29 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
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ACD20_9_5
uncultured bacterium, Bacteria
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Not on your lists |
6883..7137
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seg (db=Seg db_id=seg from=38 to=48)
seg (db=Seg db_id=seg from=68 to=79)
Uncharacterized protein {ECO:0000313|EMBL:EKE03103.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_9_6
uncultured bacterium, Bacteria
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Not on your lists |
7321..8208
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HDIG domain-containing protein
seg (db=Seg db_id=seg from=233 to=250)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=1 to=286 evalue=1.9e-61)
no description (db=Gene3D db_id=G3DSA:1.10.3150.10 from=6 to=265 evalue=3.4e-60)
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ACD20_9_7
uncultured bacterium, Bacteria
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Not on your lists |
8264..8743
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CheD, stimulates methylation of MCP proteins n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN12_9FIRM (db=UNIREF evalue=2.0e-33 bit_score=144.0 identity=45.28 coverage=97.5)
CheD (EC:3.5.1.44)
CheD (db=HMMPfam db_id=PF03975 from=46 to=156 evalue=7.2e-28 interpro_id=IPR005659 interpro_description=Chemoreceptor glutamine deamidase cheD GO=Biological Process: chemotaxis (GO:0006935), Molecular Function: protein-glutamine glutaminase activity (GO:0050568))
CheD (db=HAMAP db_id=MF_01440 from=2 to=155 evalue=24.298 interpro_id=IPR005659 interpro_description=Chemoreceptor glutamine deamidase cheD GO=Biological Process: chemotaxis (GO:0006935), Molecular Function: protein-glutamine glutaminase activity (GO:0050568))
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ACD20_9_8
uncultured bacterium, Bacteria
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Not on your lists |
8758..9117
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cheY; regulator of chemotaxis and motility
CheY-like (db=superfamily db_id=SSF52172 from=1 to=119 evalue=3.9e-37 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=2 to=114 evalue=1.1e-33 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=3 to=119 evalue=4.3e-32)
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ACD20_9_9
uncultured bacterium, Bacteria
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Not on your lists |
9284..10291
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transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=227)
seg (db=Seg db_id=seg from=205 to=223)
seg (db=Seg db_id=seg from=279 to=291)
FliO (db=HMMPfam db_id=PF04347 from=242 to=302 evalue=1.0e-10)
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ACD20_9_10
uncultured bacterium, Bacteria
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Not on your lists |
10424..11311
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N-acetylneuraminate synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025T3_SOLUE (db=UNIREF evalue=7.0e-107 bit_score=390.0 identity=62.68 coverage=95.6081081081081)
N-acetylneuraminate synthase (EC:2.5.1.56)
N-acetylneuraminate synthase (EC:2.5.1.56)
SIALIC ACID SYNTHASE-RELATED (db=HMMPanther db_id=PTHR23416 from=12 to=287 evalue=6.4e-107)
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ACD20_9_11
uncultured bacterium, Bacteria
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Not on your lists |
11298..11783
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N-Acetylneuraminate cytidylyltransferase (EC:2.7.7.43)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=1 to=161 evalue=9.1e-39)
YrbI-phosphatas: 3-deoxy-D-manno-octu (db=HMMTigr db_id=TIGR01670 from=8 to=161 evalue=9.4e-36 interpro_id=IPR010023 interpro_description=Phosphatase KdsC GO=Biological Process: lipopolysaccharide biosynthetic process (GO:0009103), Molecular Function: 3-deoxy-manno-octulosonate-8-phosphatase activity (GO:0019143))
N-ACYLNEURAMINATE-9-PHOSPHATASE (db=HMMPanther db_id=PTHR21485:SF10 from=18 to=144 evalue=5.7e-30)
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ACD20_9_12
uncultured bacterium, Bacteria
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Not on your lists |
11798..13669
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hypothetical protein
Putative uncharacterized protein n=1 Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7R834_9THEO (db=UNIREF evalue=4.0e-28 bit_score=130.0 identity=28.54 coverage=68.4294871794872)
coiled-coil (db=Coil db_id=coil from=522 to=550 evalue=NA)
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ACD20_9_13
uncultured bacterium, Bacteria
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Not on your lists |
comp(13699..14199)
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transcriptional regulator, PadR-like family
Transcriptional regulator, PadR family n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3AIF8_9CLOT (db=UNIREF evalue=9.0e-13 bit_score=75.9 identity=44.87 coverage=45.5089820359281)
seg (db=Seg db_id=seg from=128 to=139)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=166 evalue=3.1e-21)
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ACD20_9_14
uncultured bacterium, Bacteria
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Not on your lists |
14519..14908
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transposase
seg (db=Seg db_id=seg from=100 to=122)
IS4 family transposase {ECO:0000313|EMBL:EKE03112.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
IS4 family transposase alias=ACD20_40617.48787.13G0014,ACD20_40617.48787.13_14,ACD20_C00009G00014 id=17965 tax=ACD20 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
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ACD20_9_15
uncultured bacterium, Bacteria
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Not on your lists |
14941..15303
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transposase
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
Transposase_11 (db=HMMPfam db_id=PF01609 from=2 to=115 evalue=2.6e-11 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
transposase; K07492 putative transposase alias=ACD20_C00009G00015,ACD20_40617.48787.13G0015,ACD20_40617.48787.13_15 id=17972 tax=ACD20 species=Methanosarcina acetivorans genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
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ACD20_9_16
uncultured bacterium, Bacteria
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Not on your lists |
15470..16219
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undecaprenyl diphosphate synthase
UPP_SYNTHASE (db=PatternScan db_id=PS01066 from=193 to=210 evalue=0.0 interpro_id=IPR018520 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
uppS: di-trans,poly-cis-decaprenylcistransfe (db=HMMTigr db_id=TIGR00055 from=21 to=247 evalue=5.2e-115 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR10291 from=22 to=248 evalue=4.1e-111 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
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ACD20_9_17
uncultured bacterium, Bacteria
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Not on your lists |
16223..16813
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nucleoside-triphosphatase
seg (db=Seg db_id=seg from=13 to=24)
TIGR00042: non-canonical purine NTP pyropho (db=HMMTigr db_id=TIGR00042 from=7 to=193 evalue=6.8e-77 interpro_id=IPR002637 interpro_description=Ham1-like protein GO=Molecular Function: hydrolase activity (GO:0016787))
HAM1 PROTEIN-RELATED (db=HMMPanther db_id=PTHR11067:SF1 from=4 to=193 evalue=4.5e-72)
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ACD20_9_18
uncultured bacterium, Bacteria
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Not on your lists |
16853..18055
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seg (db=Seg db_id=seg from=374 to=400)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKE03116.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_9_19
uncultured bacterium, Bacteria
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Not on your lists |
comp(18071..18559)
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18071..18559 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03117.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_9_20
uncultured bacterium, Bacteria
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Not on your lists |
19634..20026
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oxidoreductase
NADH OXIDOREDUCTASE-RELATED (db=HMMPanther db_id=PTHR22893 from=3 to=129 evalue=6.7e-53)
2,4-DIENOYL-COA REDUCTASE [NADPH] (db=HMMPanther db_id=PTHR22893:SF7 from=3 to=129 evalue=6.7e-53)
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=1 to=130 evalue=1.0e-45 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
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cytoplasmic
kelly wrighton
(11/15/12)
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ACD20_9_21
uncultured bacterium, Bacteria
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Not on your lists |
20210..20431
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NADH:flavin oxidoreductase
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=D5CNI9_SIDLE (db=UNIREF evalue=1.0e-15 bit_score=85.1 identity=57.14 coverage=93.2432432432432)
NADH OXIDOREDUCTASE-RELATED (db=HMMPanther db_id=PTHR22893 from=7 to=73 evalue=6.2e-17)
2,4-DIENOYL-COA REDUCTASE [NADPH] (db=HMMPanther db_id=PTHR22893:SF7 from=7 to=73 evalue=6.2e-17)
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cytoplasmic
kelly wrighton
(11/15/12)
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ACD20_9_22
uncultured bacterium, Bacteria
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Not on your lists |
comp(20524..21666)
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alanine racemase
Alanine racemase n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IUK5_9CHRO (db=UNIREF evalue=8.0e-74 bit_score=281.0 identity=42.59 coverage=95.5380577427822)
seg (db=Seg db_id=seg from=266 to=281)
ALANINE_RACEMASE (db=PatternScan db_id=PS00395 from=43 to=53 evalue=0.0 interpro_id=IPR020622 interpro_description=Alanine racemase, pyridoxal-phosphate attachment site GO=Biological Process: alanine metabolic process (GO:0006522), Molecular Function: alanine racemase activity (GO:0008784))
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ACD20_9_23
uncultured bacterium, Bacteria
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Not on your lists |
21840..22868
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oxidoreductase domain-containing protein
OXIDOREDUCTASES (db=HMMPanther db_id=PTHR22604 from=53 to=338 evalue=6.9e-46)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=3 to=148 evalue=8.0e-45)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=3 to=155 evalue=8.2e-40 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
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membrane bound potential? psort 4.48 periplasm, and cytoplasm 5.41
kelly wrighton
(11/15/12)
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ACD20_9_24
uncultured bacterium, Bacteria
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Not on your lists |
23250..23627
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23250..23627 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03100.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_9_25
uncultured bacterium, Bacteria
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Not on your lists |
24063..25388
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trigger factor
seg (db=Seg db_id=seg from=2 to=11)
coiled-coil (db=Coil db_id=coil from=264 to=285 evalue=NA)
tig: trigger factor (db=HMMTigr db_id=TIGR00115 from=11 to=422 evalue=2.5e-148 interpro_id=IPR005215 interpro_description=Trigger factor GO=Biological Process: protein transport (GO:0015031))
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ACD20_9_26
uncultured bacterium, Bacteria
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Not on your lists |
25427..26038
|
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
seg (db=Seg db_id=seg from=192 to=202)
CLP_PROTEASE_HIS (db=PatternScan db_id=PS00382 from=112 to=125 evalue=0.0 interpro_id=IPR018215 interpro_description=Peptidase S14, ClpP, active site GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
CLP_PROTEASE_SER (db=PatternScan db_id=PS00381 from=90 to=101 evalue=0.0 interpro_id=IPR018215 interpro_description=Peptidase S14, ClpP, active site GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
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ACD20_9_27
uncultured bacterium, Bacteria
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Not on your lists |
26054..27367
|
ATP-dependent Clp protease ATP-binding subunit clpX n=1 Tax=Cyanothece sp. PCC 7424 RepID=CLPX_CYAP7 (db=UNIREF evalue=2.0e-165 bit_score=585.0 identity=66.0 coverage=98.8584474885845)
clpX; ATP-dependent protease ATP-binding subunit ClpX
clpX; ATP-dependent protease ATP-binding subunit ClpX
seg (db=Seg db_id=seg from=46 to=57)
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ACD20_9_28
uncultured bacterium, Bacteria
|
Not on your lists |
27493..29889
|
hypothetical protein
hypothetical protein
ATP-dependent protease La n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HP65_9FIRM (db=UNIREF evalue=0.0 bit_score=733.0 identity=47.71 coverage=95.4943679599499)
seg (db=Seg db_id=seg from=238 to=255)
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ACD20_9_29
uncultured bacterium, Bacteria
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Not on your lists |
comp(29891..30532)
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DNA mismatch repair protein MutL
seg (db=Seg db_id=seg from=71 to=84)
DNA mismatch repair protein MutL (db=superfamily db_id=SSF118116 from=30 to=211 evalue=1.6e-47)
no description (db=HMMSmart db_id=SM00853 from=35 to=169 evalue=5.1e-35 interpro_id=IPR014790 interpro_description=MutL, C-terminal, dimerisation)
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ACD20_9_30
uncultured bacterium, Bacteria
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Not on your lists |
32355..34220
|
cellulose-binding protein
seg (db=Seg db_id=seg from=539 to=553)
seg (db=Seg db_id=seg from=386 to=403)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
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