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ACD20_18

Alias: ACD20_20398.28785.13

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_18_1

Not on your lists

comp(545..1402)
DNA (858bp) protein (286aa)
coiled-coil (db=Coil db_id=coil from=105 to=133 evalue=NA)
coiled-coil (db=Coil db_id=coil from=83 to=104 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE04000.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_2

Not on your lists

1797..2033
DNA (237bp) protein (79aa)
seg (db=Seg db_id=seg from=55 to=77)
seg (db=Seg db_id=seg from=13 to=42)
Uncharacterized protein {ECO:0000313|EMBL:EKE04001.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_3

Not on your lists

comp(2088..2741)
DNA (654bp) protein (218aa)
rpe; ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
RIBUL_P_3_EPIMER_2 (db=PatternScan db_id=PS01086 from=136 to=158 evalue=0.0 interpro_id=IPR000056 interpro_description=Ribulose-phosphate 3-epimerase GO=Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolic process (GO:0005975))
RIBUL_P_3_EPIMER_1 (db=PatternScan db_id=PS01085 from=33 to=47 evalue=0.0 interpro_id=IPR000056 interpro_description=Ribulose-phosphate 3-epimerase GO=Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolic process (GO:0005975))
rpe: ribulose-phosphate 3-epimerase (db=HMMTigr db_id=TIGR01163 from=5 to=217 evalue=2.5e-108 interpro_id=IPR000056 interpro_description=Ribulose-phosphate 3-epimerase GO=Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolic process (GO:0005975))
ACD20_18_4

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comp(2734..3459)
DNA (726bp) protein (242aa)
Ribonuclease 3 (EC:3.1.26.3)
RNASE_3_1 (db=PatternScan db_id=PS00517 from=49 to=57 evalue=0.0 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
RNaseIII: ribonuclease III (db=HMMTigr db_id=TIGR02191 from=13 to=233 evalue=1.9e-92 interpro_id=IPR011907 interpro_description=Ribonuclease III, bacterial GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: rRNA catabolic process (GO:0016075))
RIBONUCLEASE III (db=HMMPanther db_id=PTHR11207 from=5 to=233 evalue=2.7e-70)
ACD20_18_5

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comp(3461..4315)
DNA (855bp) protein (285aa)
phosphatidate cytidylyltransferase
seg (db=Seg db_id=seg from=155 to=169)
transmembrane_regions (db=TMHMM db_id=tmhmm from=263 to=282)
transmembrane_regions (db=TMHMM db_id=tmhmm from=191 to=213)
ACD20_18_6

Not on your lists

comp(4315..4875)
DNA (561bp) protein (187aa)
ribosome recycling factor
seg (db=Seg db_id=seg from=175 to=186)
frr: ribosome recycling factor (db=HMMTigr db_id=TIGR00496 from=11 to=186 evalue=2.0e-92 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (db=HMMPanther db_id=PTHR20982:SF3 from=1 to=186 evalue=4.0e-87 interpro_id=IPR015998 interpro_description=Ribosome recycling factor, bacterial-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: translational termination (GO:0006415))
ACD20_18_7

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comp(4862..5614)
DNA (753bp) protein (251aa)
uridylate kinase
pyrH_bact: UMP kinase (db=HMMTigr db_id=TIGR02075 from=10 to=243 evalue=5.4e-148 interpro_id=IPR015963 interpro_description=Uridylate kinase, bacteria GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: UMP kinase activity (GO:0033862))
Uridylate kinase (db=HMMPIR db_id=PIRSF005650 from=8 to=244 evalue=1.9e-131 interpro_id=IPR011817 interpro_description=Uridylate kinase GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221), Molecular Function: uridylate kinase activity (GO:0009041))
no description (db=Gene3D db_id=G3DSA:3.40.1160.10 from=4 to=242 evalue=5.2e-90 interpro_id=IPR001048 interpro_description=Aspartate/glutamate/uridylate kinase GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652))
ACD20_18_8

Not on your lists

comp(5735..7078)
DNA (1344bp) protein (448aa)
seg (db=Seg db_id=seg from=328 to=347)
seg (db=Seg db_id=seg from=315 to=326)
seg (db=Seg db_id=seg from=168 to=179)
Uncharacterized protein {ECO:0000313|EMBL:EKE04007.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_9

Not on your lists

7273..8655
DNA (1383bp) protein (461aa)
seg (db=Seg db_id=seg from=157 to=169)
Uncharacterized protein {ECO:0000313|EMBL:EKE04008.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_10

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comp(8853..9440)
DNA (588bp) protein (196aa)
phosphoheptose isomerase
gmhA: phosphoheptose isomerase (db=HMMTigr db_id=TIGR00441 from=38 to=192 evalue=1.8e-83 interpro_id=IPR004515 interpro_description=Phosphoheptose isomerase, subgroup GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: D-sedoheptulose 7-phosphate isomerase activity (GO:0008968), Biological Process: lipopolysaccharide core region biosynthetic process (GO:0009244))
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=7 to=195 evalue=5.0e-57)
SIS domain (db=superfamily db_id=SSF53697 from=8 to=195 evalue=1.6e-45)
ACD20_18_11

Not on your lists

comp(9741..9962)
DNA (222bp) protein (74aa)
9741..9962 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03997.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_12

Not on your lists

10420..10818
DNA (399bp) protein (133aa)
VanZ family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=60)
ACD20_18_13

Not on your lists

comp(10867..11259)
DNA (393bp) protein (131aa)
10867..11259 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03999.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_14

Not on your lists

12163..13131
DNA (969bp) protein (323aa)
seg (db=Seg db_id=seg from=29 to=47)
seg (db=Seg db_id=seg from=94 to=112)
seg (db=Seg db_id=seg from=224 to=239)
Uncharacterized protein {ECO:0000313|EMBL:EKE03979.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_15

Not on your lists

13385..14080
DNA (696bp) protein (232aa)
FlgE; flagellar basal body and hook proteins
FlgEFG_subfam: fagellar hook-basal body (db=HMMTigr db_id=TIGR03506 from=12 to=210 evalue=3.9e-12 interpro_id=IPR020013 interpro_description=Fagellar hook-basal body protein, FlgE/F/G)
Flagellar hook protein flgE (db=superfamily db_id=SSF117143 from=79 to=189 evalue=7.3e-11)
flagellar basal body rod protein; K02392 flagellar basal-body rod protein FlgG alias=ACD20_C00018G00015,ACD20_20398.28785.13G0015,ACD20_20398.28785.13_15 id=18247 tax=ACD20 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_18_16

Not on your lists

14100..14813
DNA (714bp) protein (238aa)
flgG; flagellar basal-body rod protein
Flagellar basal-body rod protein FlgG n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AZ38_9RHOB (db=UNIREF evalue=3.0e-26 bit_score=122.0 identity=34.62 coverage=86.1344537815126)
Flagellar hook protein flgE (db=superfamily db_id=SSF117143 from=71 to=197 evalue=2.1e-27)
FlgEFG_subfam: fagellar hook-basal body (db=HMMTigr db_id=TIGR03506 from=6 to=203 evalue=5.5e-27 interpro_id=IPR020013 interpro_description=Fagellar hook-basal body protein, FlgE/F/G)
ACD20_18_17

Not on your lists

14857..15192
DNA (336bp) protein (112aa)
14857..15192 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03982.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_18

Not on your lists

15197..15640
DNA (444bp) protein (148aa)
flgC; flagellar basal body rod protein FlgC
seg (db=Seg db_id=seg from=71 to=81)
DUF1078 (db=HMMPfam db_id=PF06429 from=107 to=144 evalue=1.0e-06 interpro_id=IPR010930 interpro_description=Protein of unknown function DUF1078, C-terminal GO=Cellular Component: flagellum (GO:0019861))
Flg_bb_rod (db=HMMPfam db_id=PF00460 from=7 to=36 evalue=4.1e-05 interpro_id=IPR001444 interpro_description=Flagellar basal body rod protein, N-terminal GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
ACD20_18_19

Not on your lists

15684..16295
DNA (612bp) protein (204aa)
lytic transglycosylase
seg (db=Seg db_id=seg from=156 to=172)
TRANSGLYCOSYLASE (db=PatternScan db_id=PS00922 from=97 to=125 evalue=0.0 interpro_id=IPR000189 interpro_description=Prokaryotic transglycosylase, active site)
Lysozyme-like (db=superfamily db_id=SSF53955 from=74 to=198 evalue=1.5e-45)
ACD20_18_20

Not on your lists

16299..16631
DNA (333bp) protein (111aa)
seg (db=Seg db_id=seg from=88 to=101)
FliE (db=HMMPfam db_id=PF02049 from=25 to=110 evalue=2.0e-17 interpro_id=IPR001624 interpro_description=Flagellar hook-basal body complex protein FliE GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
fliE: flagellar hook-basal body complex prot (db=HMMTigr db_id=TIGR00205 from=1 to=110 evalue=4.3e-09 interpro_id=IPR001624 interpro_description=Flagellar hook-basal body complex protein FliE GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
FLGHOOKFLIE (db=FPrintScan db_id=PR01006 from=95 to=108 evalue=6.6e-07 interpro_id=IPR001624 interpro_description=Flagellar hook-basal body complex protein FliE GO=Biological Process: ciliary or flagellar motility (GO:0001539), Molecular Function: motor activity (GO:0003774), Molecular Function: structural molecule activity (GO:0005198), Cellular Component: bacterial-type flagellum (GO:0009288))
ACD20_18_21

Not on your lists

16682..18325
DNA (1644bp) protein (548aa)
flagellar M-ring protein FliF
Flagellar M-ring protein FliF n=1 Tax=Geobacter sp. M18 RepID=C6MM84_9DELT (db=UNIREF evalue=1.0e-22 bit_score=112.0 identity=27.17 coverage=71.5328467153285)
seg (db=Seg db_id=seg from=9 to=27)
seg (db=Seg db_id=seg from=29 to=47)
ACD20_18_22

Not on your lists

18400..19350
DNA (951bp) protein (317aa)
seg (db=Seg db_id=seg from=164 to=178)
Uncharacterized protein {ECO:0000313|EMBL:EKE03987.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_23

Not on your lists

19381..20058
DNA (678bp) protein (226aa)
fliH; flagellar assembly protein FliH
seg (db=Seg db_id=seg from=2 to=11)
seg (db=Seg db_id=seg from=34 to=56)
FliH (db=HMMPfam db_id=PF02108 from=89 to=215 evalue=9.8e-22 interpro_id=IPR018035 interpro_description=Flagellar assembly protein FliH/Type III secretion system HrpE)
ACD20_18_24

Not on your lists

20071..22176
DNA (2106bp) protein (702aa)
flagellar biosynthesis protein FlhA
transmembrane_regions (db=TMHMM db_id=tmhmm from=298 to=320)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
ACD20_18_25

Not on your lists

22314..23666
DNA (1353bp) protein (451aa)
type III secretion system ATPase, FliI/YscN (EC:3.6.3.15)
seg (db=Seg db_id=seg from=93 to=105)
ATPASE_ALPHA_BETA (db=PatternScan db_id=PS00152 from=355 to=364 evalue=0.0 interpro_id=IPR020003 interpro_description=ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO=Molecular Function: ATP binding (GO:0005524))
fliI_yscN: ATPase FliI/YscN family (db=HMMTigr db_id=TIGR01026 from=10 to=445 evalue=1.2e-186 interpro_id=IPR005714 interpro_description=ATPase, type III secretion system, FliI/YscN GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: biosynthetic process (GO:0009058), Molecular Function: ATPase activity (GO:0016887), Biological Process: protein secretion by the type III secretion system (GO:0030254), Cellular Component: type III protein secretion system complex (GO:0030257))
ACD20_18_26

Not on your lists

23860..24357
DNA (498bp) protein (166aa)
seg (db=Seg db_id=seg from=89 to=125)
seg (db=Seg db_id=seg from=147 to=153)
coiled-coil (db=Coil db_id=coil from=18 to=53 evalue=NA)
coiled-coil (db=Coil db_id=coil from=75 to=110 evalue=NA)
ACD20_18_27

Not on your lists

24347..25105
DNA (759bp) protein (253aa)
24347..25105 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03992.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_18_28

Not on your lists

25109..25942
DNA (834bp) protein (278aa)
flagellar basal-body rod protein FlgG
seg (db=Seg db_id=seg from=266 to=277)
Flagellar hook protein flgE (db=superfamily db_id=SSF117143 from=68 to=237 evalue=5.2e-31)
FlgEFG_subfam: fagellar hook-basal body (db=HMMTigr db_id=TIGR03506 from=3 to=244 evalue=1.0e-12 interpro_id=IPR020013 interpro_description=Fagellar hook-basal body protein, FlgE/F/G)
ACD20_18_29

Not on your lists

26042..27052
DNA (1011bp) protein (337aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TFQ1_HELMI (db=UNIREF evalue=2.0e-111 bit_score=405.0 identity=58.81 coverage=98.813056379822)
DAHP_synth_Bsub: phospho-2-dehydro-3- (db=HMMTigr db_id=TIGR01361 from=69 to=328 evalue=2.3e-172 interpro_id=IPR006268 interpro_description=Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073), Molecular Function: aldehyde-lyase activity (GO:0016832))
ACD20_18_30

Not on your lists

comp(27103..28200)
DNA (1098bp) protein (366aa)
permease YjgP/YjgQ
transmembrane_regions (db=TMHMM db_id=tmhmm from=342 to=359)
transmembrane_regions (db=TMHMM db_id=tmhmm from=310 to=332)
transmembrane_regions (db=TMHMM db_id=tmhmm from=18 to=40)
Displaying items 1-30 of 31 in total

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