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ACD20_29

Alias: ACD20_14511.46098.14

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_29_1

Not on your lists

comp(59..1732)
DNA (1674bp) protein (558aa)
GAF sensor-containing diguanylate cyclase
seg (db=Seg db_id=seg from=547 to=557)
seg (db=Seg db_id=seg from=210 to=223)
coiled-coil (db=Coil db_id=coil from=457 to=478 evalue=NA)
ACD20_29_2

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1912..3048
DNA (1137bp) protein (379aa)
class V aminotransferase
aminotransferase, class V n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4681 (db=UNIREF evalue=4.0e-73 bit_score=278.0 identity=37.5 coverage=94.9868073878628)
seg (db=Seg db_id=seg from=367 to=378)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=2 to=378 evalue=4.9e-83 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
ACD20_29_3

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3176..5185
DNA (2010bp) protein (670aa)
ATP-dependent DNA helicase
ATP-dependent DNA helicase
UvrD/REP helicase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MED1_RHOM4 (db=UNIREF evalue=1.0e-163 bit_score=580.0 identity=46.6 coverage=97.1641791044776)
seg (db=Seg db_id=seg from=444 to=454)
ACD20_29_4

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5562..8594
DNA (3033bp) protein (1011aa)
transglutaminase
Transglutaminase-like protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C1C2_9PLAN (db=UNIREF evalue=3.0e-30 bit_score=138.0 identity=23.62 coverage=44.5103857566766)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=632 to=644)
ACD20_29_5

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8719..10056
DNA (1338bp) protein (446aa)
ferredoxin-dependent glutamate synthase rbh
ferredoxin-dependent glutamate synthase rbh
Ferredoxin-dependent glutamate synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8G260_DESHD (db=UNIREF evalue=3.0e-132 bit_score=475.0 identity=56.62 coverage=97.7578475336323)
seg (db=Seg db_id=seg from=105 to=116)
NO Fe-S clusters CXXCXXCXXXC questionable- best hit: pelosinus fermentans kelly wrighton (11/15/12)
ACD20_29_6

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comp(10072..10986)
DNA (915bp) protein (305aa)
SpoIID/LytB domain-containing protein
seg (db=Seg db_id=seg from=163 to=174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
SpoIID_LytB: SpoIID/LytB domain (db=HMMTigr db_id=TIGR02669 from=133 to=299 evalue=1.6e-60 interpro_id=IPR013486 interpro_description=Sporulation stage II protein D, amidase enhancer LytB GO=Biological Process: sporulation resulting in formation of a cellular spore (GO:0030435))
ACD20_29_7

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comp(11160..11483)
DNA (324bp) protein (108aa)
11160..11483 - (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE04541.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_29_8

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12029..12781
DNA (753bp) protein (251aa)
Ser/Thr protein phosphatase
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=1 to=231 evalue=4.1e-58)
no description (db=Gene3D db_id=G3DSA:3.60.21.10 from=1 to=247 evalue=9.5e-56)
Predicted phosphoesterase, MJ0912 type (db=HMMPIR db_id=PIRSF000883 from=1 to=245 evalue=1.2e-52 interpro_id=IPR011152 interpro_description=Phosphoesterase MJ0912)
ACD20_29_9

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comp(12824..14278)
DNA (1455bp) protein (485aa)
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Persephonella marina EX-H1 RepID=C0QSW1_PERMH (db=UNIREF evalue=3.0e-109 bit_score=399.0 identity=42.53 coverage=96.701030927835)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=7 to=475 evalue=3.2e-150)
ACD20_29_10

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comp(14357..15199)
DNA (843bp) protein (281aa)
Ser/Thr protein phosphatase
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=36 to=250 evalue=4.1e-28)
Metallophos (db=HMMPfam db_id=PF00149 from=45 to=205 evalue=4.7e-08 interpro_id=IPR004843 interpro_description=Metallophosphoesterase GO=Molecular Function: hydrolase activity (GO:0016787))
Ser/Thr protein phosphatase family protein; K07098 alias=ACD20_C00029G00010,ACD20_14511.46098.14G0010,ACD20_14511.46098.14_10 id=18528 tax=ACD20 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_29_11

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15358..16458
DNA (1101bp) protein (367aa)
lipopolysaccharide heptosyltransferase II
seg (db=Seg db_id=seg from=292 to=300)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=32 to=364 evalue=4.0e-58)
no description (db=Gene3D db_id=G3DSA:3.40.50.2000 from=188 to=364 evalue=1.6e-28)
ACD20_29_12

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comp(16579..17568)
DNA (990bp) protein (330aa)
hypothetical protein
seg (db=Seg db_id=seg from=297 to=315)
seg (db=Seg db_id=seg from=11 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
ACD20_29_13

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comp(17618..18259)
DNA (642bp) protein (214aa)
cob(I)alamin adenosyltransferase (EC:2.5.1.17)
ATP:cob(I)alamin adenosyltransferase, CobA type (db=HMMPIR db_id=PIRSF015617 from=1 to=213 evalue=3.0e-66 interpro_id=IPR003724 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity (GO:0008817), Biological Process: cobalamin biosynthetic process (GO:0009236))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=17 to=213 evalue=4.4e-56)
CobA_CobO_BtuR (db=HMMPfam db_id=PF02572 from=37 to=213 evalue=1.7e-54 interpro_id=IPR003724 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity (GO:0008817), Biological Process: cobalamin biosynthetic process (GO:0009236))
ACD20_29_14

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comp(18468..19148)
DNA (681bp) protein (227aa)
two-component response regulator
CheY-like (db=superfamily db_id=SSF52172 from=2 to=200 evalue=1.8e-33 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=5 to=131 evalue=6.3e-30)
no description (db=HMMSmart db_id=SM00448 from=5 to=118 evalue=2.5e-29 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD20_29_15

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comp(19551..19943)
DNA (393bp) protein (131aa)
seg (db=Seg db_id=seg from=50 to=84)
coiled-coil (db=Coil db_id=coil from=91 to=119 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE04549.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_29_16

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comp(20277..22094)
DNA (1818bp) protein (606aa)
kup; potassium uptake protein Kup
kup; potassium uptake protein Kup
Probable potassium transport system protein kup n=1 Tax=Methanosarcina acetivorans RepID=KUP_METAC (db=UNIREF evalue=0.0 bit_score=710.0 identity=63.06 coverage=98.8448844884488)
seg (db=Seg db_id=seg from=29 to=38)
ACD20_29_17

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comp(22416..23900)
DNA (1485bp) protein (495aa)
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha
tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha
Fumarate hydratase n=18 Tax=Acinetobacter RepID=A3M1Z1_ACIBT (db=UNIREF evalue=4.0e-97 bit_score=358.0 identity=43.5 coverage=92.5252525252525)
seg (db=Seg db_id=seg from=204 to=217)
ACD20_29_18

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24003..24587
DNA (585bp) protein (195aa)
formylmethionine deformylase (EC:3.5.1.88)
seg (db=Seg db_id=seg from=172 to=183)
pept_deformyl: peptide deformylase (db=HMMTigr db_id=TIGR00079 from=3 to=163 evalue=1.9e-59 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Peptide deformylase (db=superfamily db_id=SSF56420 from=2 to=166 evalue=5.7e-55 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
ACD20_29_19

Not on your lists

24602..25549
DNA (948bp) protein (316aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
fmt: methionyl-tRNA formyltransferase (db=HMMTigr db_id=TIGR00460 from=1 to=315 evalue=1.7e-101 interpro_id=IPR005794 interpro_description=Methionyl-tRNA formyltransferase GO=Molecular Function: methionyl-tRNA formyltransferase activity (GO:0004479), Biological Process: translation (GO:0006412))
Formyltransferase (db=superfamily db_id=SSF53328 from=1 to=208 evalue=9.3e-67 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
no description (db=Gene3D db_id=G3DSA:3.40.50.170 from=1 to=207 evalue=2.3e-62 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
ACD20_29_20

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25697..26407
DNA (711bp) protein (237aa)
peptidase, membrane zinc metallopeptidase
seg (db=Seg db_id=seg from=204 to=220)
seg (db=Seg db_id=seg from=153 to=167)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
ACD20_29_21

Not on your lists

comp(26454..27494)
DNA (1041bp) protein (347aa)
coiled-coil (db=Coil db_id=coil from=211 to=243 evalue=NA)
coiled-coil (db=Coil db_id=coil from=120 to=141 evalue=NA)
coiled-coil (db=Coil db_id=coil from=148 to=190 evalue=NA)
coiled-coil (db=Coil db_id=coil from=61 to=103 evalue=NA)
ACD20_29_22

Not on your lists

27742..28698
DNA (957bp) protein (319aa)
hypothetical protein
seg (db=Seg db_id=seg from=230 to=242)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=120 to=300 evalue=4.8e-31)
HD (db=HMMPfam db_id=PF01966 from=137 to=259 evalue=4.3e-16 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
ACD20_29_23

Not on your lists

comp(28728..29387)
DNA (660bp) protein (220aa)
NUDIX hydrolase
seg (db=Seg db_id=seg from=138 to=152)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=53 to=74 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=7 to=157 evalue=7.8e-44 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD20_29_24

Not on your lists

comp(29374..31014)
DNA (1641bp) protein (547aa)
Similar to NAD synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q210_9BACT (db=UNIREF evalue=1.0e-174 bit_score=617.0 identity=55.88 coverage=98.7202925045704)
NAD+ synthetase
NAD+ synthetase
NITRIL_CHT_1 (db=PatternScan db_id=PS00920 from=33 to=48 evalue=0.0 interpro_id=IPR000132 interpro_description=Nitrilase/cyanide hydratase, conserved site GO=Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
ACD20_29_25

Not on your lists

comp(31478..33808)
DNA (2331bp) protein (777aa)
type II restriction enzyme, methylase subunit
seg (db=Seg db_id=seg from=5 to=19)
seg (db=Seg db_id=seg from=594 to=605)
N6_MTASE (db=PatternScan db_id=PS00092 from=318 to=324 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
ACD20_29_26

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comp(33805..34074)
DNA (270bp) protein (90aa)
glutaredoxin
Glutaredoxin and related proteins n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2A5_9PROT (db=UNIREF evalue=2.0e-18 bit_score=94.4 identity=45.45 coverage=95.5555555555556)
GLUTAREDOXIN_1 (db=PatternScan db_id=PS00195 from=6 to=22 evalue=0.0 interpro_id=IPR011767 interpro_description=Glutaredoxin active site GO=Molecular Function: electron carrier activity (GO:0009055), Biological Process: cell redox homeostasis (GO:0045454))
GRX_bact: glutaredoxin (db=HMMTigr db_id=TIGR02181 from=6 to=82 evalue=2.1e-31 interpro_id=IPR011900 interpro_description=Glutaredoxin, GrxC GO=Biological Process: cell redox homeostasis (GO:0045454))
ACD20_29_27

Not on your lists

34342..35739
DNA (1398bp) protein (466aa)
capsular polysaccharide biosynthesis protein
seg (db=Seg db_id=seg from=171 to=184)
seg (db=Seg db_id=seg from=394 to=414)
capsular polysaccharide biosynthesis protein; K01912 phenylacetate-CoA ligase [EC:6.2.1.30] alias=ACD20_C00029G00027,ACD20_14511.46098.14G0027,ACD20_14511.46098.14_27 id=18520 tax=ACD20 species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_29_28

Not on your lists

35763..37121
DNA (1359bp) protein (453aa)
capsular polysaccharide biosynthesis protein
seg (db=Seg db_id=seg from=20 to=33)
Uncharacterized protein {ECO:0000313|EMBL:EKE04533.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
capsular polysaccharide biosynthesis protein; K01912 phenylacetate-CoA ligase [EC:6.2.1.30] alias=ACD20_C00029G00028,ACD20_14511.46098.14G0028,ACD20_14511.46098.14_28 id=18517 tax=ACD20 species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_29_29

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comp(37138..37911)
DNA (774bp) protein (258aa)
TPR Domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22YL2_TETTH (db=UNIREF evalue=3.0e-28 bit_score=129.0 identity=35.4 coverage=87.2093023255814)
hypothetical protein
seg (db=Seg db_id=seg from=236 to=250)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=2 to=234 evalue=2.7e-59 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
ACD20_29_30

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38347..39972
DNA (1626bp) protein (542aa)
seg (db=Seg db_id=seg from=457 to=473)
Cysteine proteinases (db=superfamily db_id=SSF54001 from=279 to=541 evalue=2.2e-10)
SMAD/FHA domain (db=superfamily db_id=SSF49879 from=178 to=278 evalue=4.0e-07 interpro_id=IPR008984 interpro_description=SMAD/FHA domain)
CALPAIN_CAT (db=ProfileScan db_id=PS50203 from=286 to=516 evalue=9.744 interpro_id=IPR001300 interpro_description=Peptidase C2, calpain, catalytic domain GO=Molecular Function: calcium-dependent cysteine-type endopeptidase activity (GO:0004198), Cellular Component: intracellular (GO:0005622), Biological Process: proteolysis (GO:0006508))
Displaying items 1-30 of 38 in total

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