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ACD20_38

Alias: ACD20_39063.17082.14

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_38_1

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)
3..98 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03139.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_38_2

Not on your lists

616..1275
DNA (660bp) protein (220aa)
hypothetical protein
UPF0001 (db=PatternScan db_id=PS01211 from=70 to=84 evalue=0.0 interpro_id=IPR011078 interpro_description=Predicted pyridoxal phosphate-dependent enzyme, YBL036C type)
Predicted pyridoxal 5'-phosphate-dependent enzyme, YBL036c type (db=HMMPIR db_id=PIRSF004848 from=1 to=219 evalue=2.6e-76 interpro_id=IPR011078 interpro_description=Predicted pyridoxal phosphate-dependent enzyme, YBL036C type)
PLP-binding barrel (db=superfamily db_id=SSF51419 from=1 to=219 evalue=1.1e-67)
ACD20_38_3

Not on your lists

1320..1781
DNA (462bp) protein (154aa)
ycf50; hypothetical protein
seg (db=Seg db_id=seg from=11 to=28)
DUF552 (db=HMMPfam db_id=PF04472 from=63 to=135 evalue=2.0e-26 interpro_id=IPR007561 interpro_description=Cell division protein SepF GO=Biological Process: barrier septum formation (GO:0000917), Molecular Function: protein binding (GO:0005515))
SepF (db=HAMAP db_id=MF_01197 from=2 to=142 evalue=18.482)
ACD20_38_4

Not on your lists

comp(1892..2446)
DNA (555bp) protein (185aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=177)
transmembrane_regions (db=TMHMM db_id=tmhmm from=131 to=148)
ACD20_38_5

Not on your lists

2602..3417
DNA (816bp) protein (272aa)
LamB/YcsF family protein
LamB_YcsF (db=HMMPfam db_id=PF03746 from=19 to=251 evalue=6.6e-60 interpro_id=IPR005501 interpro_description=LamB/YcsF)
Glycoside hydrolase/deacetylase (db=superfamily db_id=SSF88713 from=17 to=255 evalue=5.6e-56 interpro_id=IPR011330 interpro_description=Glycoside hydrolase/deacetylase, beta/alpha-barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975))
Uncharacterized protein {ECO:0000313|EMBL:EKE03131.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_38_6

Not on your lists

comp(3437..4165)
DNA (729bp) protein (243aa)
seg (db=Seg db_id=seg from=205 to=215)
Uncharacterized protein {ECO:0000313|EMBL:EKE03132.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_38_7

Not on your lists

comp(4267..4629)
DNA (363bp) protein (121aa)
hypothetical protein BlinB_18076 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510419 (db=UNIREF evalue=2.0e-23 bit_score=111.0 identity=46.43 coverage=90.0826446280992)
hypothetical protein
UPF0102 (db=HMMPfam db_id=PF02021 from=11 to=103 evalue=3.5e-27 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=9 to=113 evalue=2.5e-23 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
ACD20_38_8

Not on your lists

5183..5419
DNA (237bp) protein (79aa)
Glutathione S-transferase, N-terminal domain containing protein n=3 Tax=Andropogoneae RepID=B4FN60_MAIZE (db=UNIREF evalue=2.0e-14 bit_score=81.3 identity=48.72 coverage=96.2025316455696)
hypothetical protein
GLUTAREDOXIN_1 (db=PatternScan db_id=PS00195 from=4 to=20 evalue=0.0 interpro_id=IPR011767 interpro_description=Glutaredoxin active site GO=Molecular Function: electron carrier activity (GO:0009055), Biological Process: cell redox homeostasis (GO:0045454))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=1 to=78 evalue=3.8e-18 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
ACD20_38_9

Not on your lists

comp(5474..7117)
DNA (1644bp) protein (548aa)
amino acid permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=229)
transmembrane_regions (db=TMHMM db_id=tmhmm from=242 to=261)
transmembrane_regions (db=TMHMM db_id=tmhmm from=276 to=298)
ACD20_38_10

Not on your lists

comp(7452..9146)
DNA (1695bp) protein (565aa)
putative permease
putative permease
Amino acid transporter n=3 Tax=Bacillus RepID=C3ASZ7_BACMY (db=UNIREF evalue=3.0e-105 bit_score=386.0 identity=51.35 coverage=72.9203539823009)
transmembrane_regions (db=TMHMM db_id=tmhmm from=540 to=559)
ACD20_38_11

Not on your lists

9475..15561
DNA (6087bp) protein (2029aa)
sensory transduction histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=162)
transmembrane_regions (db=TMHMM db_id=tmhmm from=271 to=293)
ACD20_38_12

Not on your lists

15742..16995
DNA (1254bp) protein (418aa)
15742..16995 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03138.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 12 items

View Taxonomy