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ACD20_85

Alias: ACD20_62664.18138.14

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_85_1

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102..1013
DNA (912bp) protein (304aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=94)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
coiled-coil (db=Coil db_id=coil from=94 to=126 evalue=NA)
ACD20_85_2

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1137..2420
DNA (1284bp) protein (428aa)
Peptidase U32 n=3 Tax=Clostridium thermocellum RepID=A3DE63_CLOTH (db=UNIREF evalue=5.0e-100 bit_score=368.0 identity=44.29 coverage=95.5607476635514)
peptidase U32
peptidase U32
Peptidase_U32 (db=HMMPfam db_id=PF01136 from=78 to=310 evalue=5.9e-86 interpro_id=IPR001539 interpro_description=Peptidase U32 GO=Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233))
ACD20_85_3

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2374..2895
DNA (522bp) protein (174aa)
HAD superfamily (subfamily IIIA) phosphatase
seg (db=Seg db_id=seg from=84 to=93)
YqeG_hyp_ppase: HAD phosphatase, famil (db=HMMTigr db_id=TIGR01668 from=2 to=170 evalue=5.3e-35 interpro_id=IPR010021 interpro_description=HAD-superfamily phosphatase, subfamily IIIA)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=157 evalue=1.3e-18)
ACD20_85_4

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2955..3827
DNA (873bp) protein (291aa)
mechanosensitive ion channel protein MscS
seg (db=Seg db_id=seg from=75 to=90)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=99 to=121)
ACD20_85_5

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comp(3874..5823)
DNA (1950bp) protein (650aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7R834_9THEO (db=UNIREF evalue=1.0e-30 bit_score=139.0 identity=26.01 coverage=77.5384615384615)
seg (db=Seg db_id=seg from=149 to=161)
MAF_flag10 (db=HMMPfam db_id=PF01973 from=198 to=366 evalue=1.1e-35 interpro_id=IPR002826 interpro_description=Protein of unknown function DUF115)
ACD20_85_6

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comp(9408..10241)
DNA (834bp) protein (278aa)
9408..10241 - (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02715.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_85_7

Not on your lists

comp(10536..10754)
DNA (219bp) protein (73aa)
hypothetical membrane associated protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=63)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
DUF378 (db=HMMPfam db_id=PF04070 from=1 to=58 evalue=2.7e-22 interpro_id=IPR007211 interpro_description=Protein of unknown function DUF378)
ACD20_85_8

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comp(11123..11767)
DNA (645bp) protein (215aa)
Transglycosylase SLT domain protein n=1 Tax=Citreicella sp. SE45 RepID=D0D282_9RHOB (db=UNIREF evalue=4.0e-29 bit_score=131.0 identity=58.2 coverage=52.093023255814)
lytic transglycosylase catalytic subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=163 to=182)
ACD20_85_9

Not on your lists

12137..13219
DNA (1083bp) protein (361aa)
ABC transporter related n=1 Tax=Thermotoga lettingae TMO RepID=A8F6Q4_THELT (db=UNIREF evalue=7.0e-119 bit_score=431.0 identity=58.36 coverage=98.3379501385042)
ABC transporter-like protein
ABC transporter-like protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=134 to=148 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ACD20_85_10

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comp(13228..14253)
DNA (1026bp) protein (342aa)
type 11 methyltransferase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=107 to=314 evalue=5.2e-25)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=157 to=305 evalue=3.2e-17)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=157 to=246 evalue=1.1e-16 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
ACD20_85_11

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comp(14457..15692)
DNA (1236bp) protein (412aa)
coiled-coil (db=Coil db_id=coil from=228 to=249 evalue=NA)
GntR (db=HMMPfam db_id=PF00392 from=319 to=382 evalue=1.3e-13 interpro_id=IPR000524 interpro_description=HTH transcriptional regulator, GntR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=57 to=130 evalue=5.0e-12)
no description (db=HMMSmart db_id=SM00345 from=231 to=290 evalue=1.0e-11 interpro_id=IPR000524 interpro_description=HTH transcriptional regulator, GntR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD20_85_12

Not on your lists


16238..16429
DNA (192bp) protein (64aa)
50S ribosomal protein L28
L28: ribosomal protein L28 (db=HMMTigr db_id=TIGR00009 from=1 to=56 evalue=1.3e-16 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28p-like (db=superfamily db_id=SSF143800 from=1 to=63 evalue=3.5e-16)
Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=3 to=56 evalue=1.3e-12 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD20_85_13

Not on your lists

16798..17493
DNA (696bp) protein (232aa)
cobalt transport protein CbiM
transmembrane_regions (db=TMHMM db_id=tmhmm from=196 to=218)
transmembrane_regions (db=TMHMM db_id=tmhmm from=141 to=163)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
ACD20_85_14

Not on your lists

17739..18014
DNA (276bp) protein (92aa)
seg (db=Seg db_id=seg from=22 to=31)
Uncharacterized protein {ECO:0000313|EMBL:EKE02711.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 14 items

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