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ACD20_122

Alias: ACD20_99295.14492.14

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_122_1

Not on your lists

comp(307..1044)
DNA (738bp) protein (246aa)
hypothetical protein PsyrpsF_38411 n=1 Tax=Pseudomonas syringae pv. syringae FF5 RepID=UPI0001CC1BA1 (db=UNIREF evalue=7.0e-08 bit_score=61.2 identity=22.87 coverage=97.9674796747967)
seg (db=Seg db_id=seg from=59 to=70)
Uncharacterized protein {ECO:0000313|EMBL:EKE02090.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_122_2

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1773..2006
DNA (234bp) protein (78aa)
seg (db=Seg db_id=seg from=52 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Uncharacterized protein {ECO:0000313|EMBL:EKE02091.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_122_3

Not on your lists

comp(2228..3274)
DNA (1047bp) protein (349aa)
RNA polymerase sigma A factor
RNA polymerase sigma factor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ANU3_9CLOT (db=UNIREF evalue=4.0e-78 bit_score=295.0 identity=53.74 coverage=78.2234957020057)
seg (db=Seg db_id=seg from=38 to=61)
seg (db=Seg db_id=seg from=249 to=262)
ACD20_122_4

Not on your lists

comp(3346..4110)
DNA (765bp) protein (255aa)
RNA methyltransferase
rRNA_methyl_3: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00186 from=3 to=244 evalue=1.8e-76 interpro_id=IPR004441 interpro_description=RNA methyltransferase TrmH, group 3 GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=52 to=253 evalue=1.9e-70)
RRNA METHYLASE (db=HMMPanther db_id=PTHR12029:SF7 from=52 to=253 evalue=1.9e-70)
ACD20_122_5

Not on your lists

4473..4853
DNA (381bp) protein (127aa)
aroH; chorismate mutase
Chorismate mutase of the AroH class (db=HMMPIR db_id=PIRSF005965 from=5 to=126 evalue=2.5e-60 interpro_id=IPR008243 interpro_description=Chorismate mutase, AroH class)
CM_mono_aroH: chorismate mutase (db=HMMTigr db_id=TIGR01796 from=7 to=123 evalue=1.4e-51 interpro_id=IPR008243 interpro_description=Chorismate mutase, AroH class)
CM_1 (db=HMMPfam db_id=PF07736 from=8 to=123 evalue=1.5e-46 interpro_id=IPR008243 interpro_description=Chorismate mutase, AroH class)
ACD20_122_6

Not on your lists

comp(4839..5744)
DNA (906bp) protein (302aa)
alpha/beta hydrolase
seg (db=Seg db_id=seg from=24 to=35)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=71 to=293 evalue=4.6e-44)
UNCHARACTERIZED (db=HMMPanther db_id=PTHR12277 from=38 to=277 evalue=9.0e-41)
ACD20_122_7

Not on your lists

6105..7082
DNA (978bp) protein (326aa)
seg (db=Seg db_id=seg from=91 to=102)
seg (db=Seg db_id=seg from=171 to=180)
Uncharacterized protein {ECO:0000313|EMBL:EKE02096.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_122_8

Not on your lists

7708..9051
DNA (1344bp) protein (448aa)
hypothetical protein
seg (db=Seg db_id=seg from=38 to=49)
HEMOLYSIN_CALCIUM (db=PatternScan db_id=PS00330 from=293 to=311 evalue=0.0 interpro_id=IPR018511 interpro_description=Hemolysin-type calcium-binding conserved site)
beta-Roll (db=superfamily db_id=SSF51120 from=151 to=277 evalue=2.8e-15 interpro_id=IPR011049 interpro_description=Serralysin-like metalloprotease, C-terminal)
ACD20_122_9

Not on your lists

9161..10777
DNA (1617bp) protein (539aa)
outer membrane efflux protein
seg (db=Seg db_id=seg from=489 to=504)
seg (db=Seg db_id=seg from=376 to=392)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD20_122_10

Not on your lists

10784..12895
DNA (2112bp) protein (704aa)
Type I secretion system ATPase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1P3_SULD5 (db=UNIREF evalue=0.0 bit_score=912.0 identity=60.66 coverage=99.0056818181818)
type I secretion system ATPase
type I secretion system ATPase
transmembrane_regions (db=TMHMM db_id=tmhmm from=286 to=308)
ACD20_122_11

Not on your lists

12888..14240
DNA (1353bp) protein (451aa)
hypothetical protein
hypothetical protein
Secretion protein HlyD family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1P2_SULD5 (db=UNIREF evalue=1.0e-98 bit_score=364.0 identity=44.11 coverage=94.6784922394678)
coiled-coil (db=Coil db_id=coil from=233 to=268 evalue=NA)
ACD20_122_12
unknown

Not on your lists

14463..14528
DNA (66bp) protein (22aa)
14463..14528 + (rbs_motif=GGxGG rbs_spacer=5-10bp)
Displaying 12 items

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