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rifcsphigho2_01_scaffold_62626_2

Organism: RIFCSPHIGHO2_01_FULL_Archaea_Diapherotrites_AR10_44_11

partial RP 30 / 55 MC: 5 BSCG 17 / 51 MC: 1 ASCG 26 / 38 MC: 2
Location: 262..828

Top 3 Functional Annotations

Value Algorithm Source
Exosome complex RNA-binding protein Csl4 n=1 Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) RepID=G0HN61_THES4 similarity UNIREF
DB: UNIREF100
  • Identity: 37.3
  • Coverage: 193.0
  • Bit_score: 121
  • Evalue 7.10e-25
RNA-binding protein similarity KEGG
DB: KEGG
  • Identity: 38.9
  • Coverage: 185.0
  • Bit_score: 124
  • Evalue 3.10e-26
Exosome complex component Csl4 {ECO:0000256|HAMAP-Rule:MF_00975}; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus paci similarity UNIPROT
DB: UniProtKB
  • Identity: 38.9
  • Coverage: 185.0
  • Bit_score: 124
  • Evalue 1.50e-25

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Taxonomy

Palaeococcus pacificus → Palaeococcus → Thermococcales → Thermococci → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 567
ATGGACAGCAAAATAGTTTTTCCCGGGGATTTCCTCACAACAGCAGAGGAATTTGTCGCGGGCAAAAACACCTATGAGGATATTTCGGGCAGGATATATGCCGCAACCGTGGGAAATGCGCAGTTCGATTTGGGCAAGAGGGAAGTAAGCGTAGATAAAAACGGCAGGGAGCTAGAGCTGCTCGAGGTCGGTTCAATCATTGAGGGCGTTGTGATAATGCTCAAGCCGCAGGCAGCAATAATTGAGATTTATGCTGCCGAAAAGGACGGAAGAAAGCTTAACATCCAGCAGTCCATCGGGGCAGTTCCCATTTCGCTTGTAAGCAGGGGCTACGTTACCACAATGGACACAAAATTCAGGATCGGGGATCTTGTAAGGGCGAAGGTCGAAGTCATAACGGCTTACTCCGTAGATAGCTCAACAGCAGATGCCGAACTGGGCGTTATAAGGGCATACTGCACCAAGTGCAGGGATGCCATGGGATTGTTCGATTCGCAGCTCAAGTGCATAAACTGCGGGAATGTCGAGCAGCGCAAGTTCTCAACGCTTTACACGCTTAAGTACTGA
PROTEIN sequence
Length: 189
MDSKIVFPGDFLTTAEEFVAGKNTYEDISGRIYAATVGNAQFDLGKREVSVDKNGRELELLEVGSIIEGVVIMLKPQAAIIEIYAAEKDGRKLNIQQSIGAVPISLVSRGYVTTMDTKFRIGDLVRAKVEVITAYSVDSSTADAELGVIRAYCTKCRDAMGLFDSQLKCINCGNVEQRKFSTLYTLKY*