ggKbase home page

rifcsphigho2_01_scaffold_17884_23

Organism: RIFCSPHIGHO2_01_FULL_Archaea_Aenigmarchaeota_AR5_44_11

near complete RP 31 / 55 MC: 8 BSCG 19 / 51 MC: 2 ASCG 34 / 38 MC: 1
Location: 19439..20335

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=2162 species="Archaea; Euryarch similarity UNIPROT
DB: UniProtKB
  • Identity: 27.1
  • Coverage: 295.0
  • Bit_score: 89
  • Evalue 1.10e-14
Shikimate dehydrogenase n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6UA99_9EURY similarity UNIREF
DB: UNIREF100
  • Identity: 29.2
  • Coverage: 233.0
  • Bit_score: 86
  • Evalue 6.90e-14
aroE; shikimate 5-dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 30.2
  • Coverage: 232.0
  • Bit_score: 80
  • Evalue 8.10e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methanobacterium formicicum → Methanobacterium → Methanobacteriales → Methanobacteria → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 897
GTGGGCGGCGAGAGGCCTTCTGATTATGCAAGAAGCTTGCATCTGCATAACGTTGCACTTCAAAAGGAACAAGTCAGAGCGGTGGCTTTTGGATTTGATGTAGAGCCCGCAACTGGCGCCAACAGAAGACCTTCAGAAACACAGCCAAACTTCCAAAGGTTTATGGACACTGTCGTGAGATATGCAAATGACTTTCTCTTGCTACACGTTACAGACCCTTATAAGACGCATGCGTACCGATACGTCACTGAAAAGCATATTGATATGAGCGAAAGTGCACGTATAAGTGGCGCCGTAAACCCGTTTCTTTTTGGCAAAGACGGTACTGTATATGCAGATAATGTTGATGGCTATGCGCTCCTCGAAGCTGTTGAAGAGAAAAGACCTGTTGTGGGCGCTAACATTCTTTTGATAGGCGCAGGAGGCACGGCAAGCTCAATTGCCCTGGAAGCCTTAAATCGCGGCGTAGGAAGGCTTGTCGTCCTAAACAGGACTGAAGAAAGAGCACATGAACTCGGCAGGCAACTGAAAGTTCATTATCCTCGTCTTTCTGAAGAACAGCTAACGACAGGCGGCGGGGAGAAACAAATGTCTAAGTCGCTAGAGGAATATGCACCTGATGCAGATATAGTAATATCTGCAGCAACAACAAATCCTTATTTCACACACGAGCTTGCAGGAGTTATTCCAAGGCGTGTATTATTTGCAGATACAAATTATGGCGACGCCGCAACGACAGCAAGAATTGCAAGAGAAACAGGCCACATGTCAATTGACGGCGGGCCCATGGTTTATTTTGGAGTTGAAAGAGCAGCAAGAGTGGCATTTGAAAGAAAACTTGGCAGAAAACTGCAAGAATCGACGCTTGCTGCTGTAAAGAAAGAGGCTTTTGGGTGA
PROTEIN sequence
Length: 299
VGGERPSDYARSLHLHNVALQKEQVRAVAFGFDVEPATGANRRPSETQPNFQRFMDTVVRYANDFLLLHVTDPYKTHAYRYVTEKHIDMSESARISGAVNPFLFGKDGTVYADNVDGYALLEAVEEKRPVVGANILLIGAGGTASSIALEALNRGVGRLVVLNRTEERAHELGRQLKVHYPRLSEEQLTTGGGEKQMSKSLEEYAPDADIVISAATTNPYFTHELAGVIPRRVLFADTNYGDAATTARIARETGHMSIDGGPMVYFGVERAARVAFERKLGRKLQESTLAAVKKEAFG*