ggKbase home page

bjp_ig2158_scaffold_3973_10

Organism: BJP_Ig2158_Hor_250_2014_Gemmatimonadetes_68_9

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 12 / 38
Location: 8693..9214

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AC64_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 45.3
  • Coverage: 170.0
  • Bit_score: 138
  • Evalue 8.90e-30
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 61.4
  • Coverage: 153.0
  • Bit_score: 186
  • Evalue 2.30e-44
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 48.0
  • Coverage: 173.0
  • Bit_score: 155
  • Evalue 1.20e-35

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Gemmatimonadetes_68_9 → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 522
ATGGATGACATTGAGCGCCTGTACCAGACCATGTATGGGTCGGTCGTCCGGTTCCTCTACCGGAAGGTCTGGGACGAGGACCGGGCCGAAGACCTGGCCCAGGAGGTGTTCATTCGGGCCATGGCCCACCGGCCCGAGAAGCCCCGAGCCTGGATCTTTGCCGTGGCGGCCAACTTGGCACGTGATGAAGCCCGGGCCGCCATCCGCCGCCGGAAGCATCTGACCCTGCTGACCAATGACCCGGTTCCCCTCTCCAGCCCCGACCGGTCGGCCGAGGAGAGCGTCGAACGCCAGGAACAGATGGCCCAGGTCCAGCAGGCGCTCGAAACGTTGTCATCGCGAGACCGGGACGTCCTGCTCCTCTGGGATGCGGGCATGAGCTACCCGGAGATCGCCCAGCAGACCGGGCTCGCGGTGGGAGCCGTGGGAACCACCCTGGCGCGGGCCCGCAAGCGACTGGTCGAGGCACATGACCGAACTGATCACGGGACCGGCGAGGCGAGACATGCGGCGCATTCCTGA
PROTEIN sequence
Length: 174
MDDIERLYQTMYGSVVRFLYRKVWDEDRAEDLAQEVFIRAMAHRPEKPRAWIFAVAANLARDEARAAIRRRKHLTLLTNDPVPLSSPDRSAEESVERQEQMAQVQQALETLSSRDRDVLLLWDAGMSYPEIAQQTGLAVGAVGTTLARARKRLVEAHDRTDHGTGEARHAAHS*