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rifcsplowo2_01_scaffold_27574

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_27574_1

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2..352
-----------------
DNA (351bp)
protein (117aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GVV9_9ZZZZ
30S ribosomal protein S3 {ECO:0000313|EMBL:AJS12176.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ribosomal protein S3, eukaryotic/archaeal type
rifcsplowo2_01_scaffold_27574_2
CG_Pacearch_03, Pacearchaeota, Archaea

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339..539
-----------------
DNA (201bp)
protein (67aa)
Tax=CG_Pacearch_03
rifcsplowo2_01_scaffold_27574_3
CG_Pacearch_03, Pacearchaeota, Archaea

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541..840
-----------------
DNA (300bp)
protein (100aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VQK7_9EURY
translation initiation factor SUI1; K03113 translation initiation factor 1 Tax=CG_Pacearch_03
translation initiation factor Sui1
rifcsplowo2_01_scaffold_27574_4

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842..1180
-----------------
DNA (339bp)
protein (113aa)
30S ribosomal protein S17P n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KSU2_ARCVS
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
SSU ribosomal protein S11e (S17p)
rifcsplowo2_01_scaffold_27574_5

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1177..1578
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=5046849 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rpl14p; 50S ribosomal protein L14P
rifcsplowo2_01_scaffold_27574_6

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1575..2018
-----------------
DNA (444bp)
protein (148aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24P
rifcsplowo2_01_scaffold_27574_7
CG_Pacearch_03, Pacearchaeota, Archaea

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2018..2638
-----------------
DNA (621bp)
protein (207aa)
30S ribosomal protein S4e n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BD32_9EURY
30S ribosomal protein S4; K02987 small subunit ribosomal protein S4e Tax=CG_Pacearch_03
SSU ribosomal protein S4E
rifcsplowo2_01_scaffold_27574_8

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2635..2853
-----------------
DNA (219bp)
protein (73aa)
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12172.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rifcsplowo2_01_scaffold_27574_9

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2846..3106
-----------------
DNA (261bp)
protein (87aa)
50S ribosomal protein L5 n=1 Tax=Methanobrevibacter sp. AbM4 RepID=R9SL28_9EURY
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12172.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl5p; ribosomal protein L5P Rpl5p
rifcsplowo2_01_scaffold_27574_10
R_OP11_Curtissbacteria_41_11, Curtissbacteria, Microgenomates, Bacteria

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3108..3338
-----------------
DNA (231bp)
protein (77aa)
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14 Tax=RIFCSPLOWO2_02_OP11_Curtissbacteria_41_11_curated
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5041773 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_27574_11

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3340..3714
-----------------
DNA (375bp)
protein (125aa)
30S ribosomal protein S8 n=1 Tax=uncultured archaeon RepID=D1JEY7_9ARCH
30S ribosomal protein S8 {ECO:0000313|EMBL:AJS12320.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8
rifcsplowo2_01_scaffold_27574_12

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3714..4259
-----------------
DNA (546bp)
protein (182aa)
50S ribosomal protein L6 n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RL6_THEKO
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12171.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6
rifcsplowo2_01_scaffold_27574_13
CG_Pacearch_06, Pacearchaeota, Archaea

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4256..4606
-----------------
DNA (351bp)
protein (117aa)
Ribosomal protein L32e n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GWY2_9EURY
Ribosomal protein L32e Tax=CG_Pacearch_06
rifcsplowo2_01_scaffold_27574_14
CG_Pacearch_06, Pacearchaeota, Archaea

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4603..5010
-----------------
DNA (408bp)
protein (136aa)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI00036CDE30
50S ribosomal protein L19e; K02885 large subunit ribosomal protein L19e Tax=CG_Pacearch_06
large subunit ribosomal protein L19e
rifcsplowo2_01_scaffold_27574_15

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5007..5486
-----------------
DNA (480bp)
protein (160aa)
50S ribosomal protein L18P n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IBI0_ACIB4
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
rifcsplowo2_01_scaffold_27574_16
CG_Pacearch_02, Pacearchaeota, Archaea

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5488..6276
-----------------
DNA (789bp)
protein (263aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=CG_Pacearch_02
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5041779 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5
rifcsplowo2_01_scaffold_27574_17
CG_Pacearch_06, Pacearchaeota, Archaea

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6273..6689
-----------------
DNA (417bp)
protein (139aa)
50S ribosomal protein L30P n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=RL30_ARCFU
ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=CG_Pacearch_06
50S ribosomal protein L30P, archaeal
rifcsplowo2_01_scaffold_27574_18

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6686..7156
-----------------
DNA (471bp)
protein (157aa)
50S ribosomal protein L15P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZE1_METFV id=5103274 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L15P
rifcsplowo2_01_scaffold_27574_19
CG_Pacearch_03, Pacearchaeota, Archaea

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7436..8863
-----------------
DNA (1428bp)
protein (476aa)
Protein translocase subunit SecY n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TB98_METSL id=5103275 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=CG_Pacearch_03
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_27574_20
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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8865..9389
-----------------
DNA (525bp)
protein (175aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000362FD74
hypothetical protein
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_01_scaffold_27574_21
unknown

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9526..9849
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

rifcsplowo2_01_scaffold_27574_22
CG_Pacearch_02, Pacearchaeota, Archaea

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comp(9992..10150)
-----------------
DNA (159bp)
protein (53aa)
proteasome endopeptidase complex, alpha subunit (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] Tax=CG_Pacearch_02
rifcsplowo2_01_scaffold_27574_23
CG_Pacearch_02, Pacearchaeota, Archaea

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comp(10204..10683)
-----------------
DNA (480bp)
protein (160aa)
proteasome endopeptidase complex, alpha subunit (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] Tax=CG_Pacearch_02
proteasome endopeptidase complex, alpha subunit (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] id=5045974 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Proteasome subunit alpha
rifcsplowo2_01_scaffold_27574_24

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10935..11873
-----------------
DNA (939bp)
protein (313aa)
Probable DNA methylase n=1 Tax=uncultured archaeon RepID=D1JHW7_9ARCH
Probable DNA methylase {ECO:0000313|EMBL:CBH38125.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
putative type IV restriction endonuclease
Displaying 24 items

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