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ACD21_11

Alias: ACD21_29560.47132.12

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Displaying items 31-46 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD21_11_31

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comp(31652..32128)
DNA (477bp) protein (159aa)
greA; transcription elongation factor GreA
GREAB_1 (db=PatternScan db_id=PS00829 from=17 to=48 evalue=0.0 interpro_id=IPR018151 interpro_description=Transcription elongation factor, GreA/GreB, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
GREAB_2 (db=PatternScan db_id=PS00830 from=121 to=137 evalue=0.0 interpro_id=IPR018151 interpro_description=Transcription elongation factor, GreA/GreB, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
greA: transcription elongation factor GreA (db=HMMTigr db_id=TIGR01462 from=5 to=156 evalue=1.3e-79 interpro_id=IPR006359 interpro_description=Transcription elongation factor GreA GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD21_11_32

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comp(32259..32768)
DNA (510bp) protein (170aa)
hypothetical protein (db=KEGG evalue=1.0e-11 bit_score=72.4 identity=36.24 coverage=85.8823529411765)
transmembrane_regions (db=TMHMM db_id=tmhmm from=126 to=146)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
ACD21_11_33

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32952..34247
DNA (1296bp) protein (432aa)
transporter, MFS superfamily
transporter, MFS superfamily
Transporter, MFS superfamily n=6 Tax=Coxiella burnetii RepID=A9KDB5_COXBN (db=UNIREF evalue=2.0e-97 bit_score=359.0 identity=45.26 coverage=94.6759259259259)
transmembrane_regions (db=TMHMM db_id=tmhmm from=235 to=257)
ACD21_11_34

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34419..35714
DNA (1296bp) protein (432aa)
ribosomal RNA small subunit methyltransferase B
ribosomal RNA small subunit methyltransferase B
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BKP8_TERTT (db=UNIREF evalue=1.0e-107 bit_score=394.0 identity=50.12 coverage=99.0740740740741)
seg (db=Seg db_id=seg from=353 to=365)
ACD21_11_35

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35889..36311
DNA (423bp) protein (141aa)
Putative Holliday junction resolvase n=2 Tax=Legionella longbeachae RepID=D3HL50_LEGLN (db=UNIREF evalue=1.0e-34 bit_score=148.0 identity=49.62 coverage=93.6170212765958)
yqgF; Holliday junction resolvase
RNAse_H_YqgF: RNAse H-fold protein YqgF (db=HMMTigr db_id=TIGR00250 from=11 to=140 evalue=6.9e-40 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
UPF0081 (db=HMMPfam db_id=PF03652 from=9 to=139 evalue=1.1e-34 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
ACD21_11_36

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comp(36312..37703)
DNA (1392bp) protein (464aa)
putative multidrug resistance protein NorM (Multidrug-efflux transporter)
transmembrane_regions (db=TMHMM db_id=tmhmm from=246 to=268)
transmembrane_regions (db=TMHMM db_id=tmhmm from=198 to=220)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=183)
ACD21_11_37

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comp(38010..38558)
DNA (549bp) protein (183aa)
3-methyladenine DNA glycosylase
seg (db=Seg db_id=seg from=108 to=123)
FMT C-terminal domain-like (db=superfamily db_id=SSF50486 from=1 to=176 evalue=1.4e-36 interpro_id=IPR011034 interpro_description=Formyl transferase, C-terminal-like GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=Gene3D db_id=G3DSA:3.10.300.10 from=1 to=176 evalue=5.9e-33 interpro_id=IPR003180 interpro_description=Methylpurine-DNA glycosylase (MPG) GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: alkylbase DNA N-glycosylase activity (GO:0003905), Biological Process: base-excision repair (GO:0006284))
ACD21_11_38

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comp(38546..38764)
DNA (219bp) protein (73aa)
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY (db=HMMPanther db_id=PTHR11527 from=5 to=68 evalue=1.3e-07)
HEAT SHOCK PROTEIN 16 (db=HMMPanther db_id=PTHR11527:SF15 from=5 to=68 evalue=1.3e-07)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=10 to=69 evalue=2.9e-07 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
Uncharacterized protein {ECO:0000313|EMBL:EKE01315.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_11_39

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39085..40137
DNA (1053bp) protein (351aa)
hypothetical protein
seg (db=Seg db_id=seg from=4 to=14)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Phospholipase D/nuclease (db=superfamily db_id=SSF56024 from=207 to=346 evalue=2.6e-29)
ACD21_11_40

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comp(40667..41116)
DNA (450bp) protein (150aa)
40667..41116 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE01317.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD21_11_41

Not on your lists

comp(41327..41566)
DNA (240bp) protein (80aa)
Carbon storage regulator homolog n=173 Tax=Gammaproteobacteria RepID=CSRA_CITK8 (db=UNIREF evalue=2.0e-21 bit_score=104.0 identity=84.48 coverage=71.25)
carbon storage regulator
csrA: carbon storage regulator (db=HMMTigr db_id=TIGR00202 from=1 to=68 evalue=8.8e-34 interpro_id=IPR003751 interpro_description=Carbon storage regulator GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of carbohydrate metabolic process (GO:0006109), Biological Process: mRNA catabolic process (GO:0006402))
CsrA (db=HMMPfam db_id=PF02599 from=1 to=54 evalue=4.5e-27 interpro_id=IPR003751 interpro_description=Carbon storage regulator GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of carbohydrate metabolic process (GO:0006109), Biological Process: mRNA catabolic process (GO:0006402))
ACD21_11_42

Not on your lists


comp(41779..44433)
DNA (2655bp) protein (885aa)
alaS; alanyl-tRNA synthetase
alaS; alanyl-tRNA synthetase
Alanyl-tRNA synthetase n=1 Tax=Allochromatium vinosum DSM 180 RepID=D3RRY5_ALLVD (db=UNIREF evalue=0.0 bit_score=892.0 identity=51.25 coverage=97.5141242937853)
coiled-coil (db=Coil db_id=coil from=741 to=762 evalue=NA)
ACD21_11_43

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comp(44508..44954)
DNA (447bp) protein (149aa)
Regulatory protein RecX n=1 Tax=Nitrosococcus halophilus Nc4 RepID=D5BZJ5_NITHN (db=UNIREF evalue=7.0e-27 bit_score=122.0 identity=44.29 coverage=92.6174496644295)
RecX family transcriptional regulator
RecX (db=HMMPfam db_id=PF02631 from=27 to=143 evalue=5.5e-27 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
RecX (db=HAMAP db_id=MF_01114 from=1 to=148 evalue=13.289)
ACD21_11_44

Not on your lists


comp(45044..46060)
DNA (1017bp) protein (339aa)
recA; recombinase A (EC:3.6.3.8)
recA; recombinase A (EC:3.6.3.8)
Protein recA n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MDS9_9PROT (db=UNIREF evalue=5.0e-153 bit_score=544.0 identity=77.58 coverage=99.1150442477876)
RECA_1 (db=PatternScan db_id=PS00321 from=214 to=222 evalue=0.0 interpro_id=IPR020584 interpro_description=DNA recombination/repair protein RecA, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA metabolic process (GO:0006259), Molecular Function: DNA-dependent ATPase activity (GO:0008094))
Top hit to Nitrosomonas (beta) Jill Banfield (11/15/12)
Best hit now (april 2012) Methylophaga aminisulfidivorans MP (gamma) kelly wrighton (11/15/12)
ACD21_11_45

Not on your lists

comp(46131..46961)
DNA (831bp) protein (277aa)
pdaC; peptidoglycan-N-acetylmuramic acid deacetylase PdaC (EC:3.5.1.-)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
Glycoside hydrolase/deacetylase (db=superfamily db_id=SSF88713 from=29 to=266 evalue=3.3e-63 interpro_id=IPR011330 interpro_description=Glycoside hydrolase/deacetylase, beta/alpha-barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975))
Polysacc_deac_1 (db=HMMPfam db_id=PF01522 from=70 to=191 evalue=3.8e-34 interpro_id=IPR002509 interpro_description=Polysaccharide deacetylase GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
ACD21_11_46

Not on your lists

47089..47169
DNA (81bp) protein (27aa)
47089..47169 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE01313.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 31-46 of 46 in total

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