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ACD21_31_7 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
Transcription-repair coupling protein Mfd n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YHC3_9GAMM (db=UNIREF evalue=0.0 bit_score=1268.0 identity=54.07 coverage=98.0189491817399) similarity UNIREF
DB: UNIREF 		54.07 98.02 1268 0.0 avd:AvCA6_14570
mfd; transcription-repair coupling factor rbh KEGG
DB: KEGG 		55.2 999.99 1250 0.0 avd:AvCA6_14570
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG 		55.2 999.99 1250 0.0 avd:AvCA6_14570
seg (db=Seg db_id=seg from=27 to=38) iprscan interpro
DB: Seg 		null null null null avd:AvCA6_14570
seg (db=Seg db_id=seg from=931 to=939) iprscan interpro
DB: Seg 		null null null null avd:AvCA6_14570
mfd: transcription-repair coupling factor (db=HMMTigr db_id=TIGR00580 from=150 to=1094 evalue=0.0 interpro_id=IPR004576 interpro_description=Transcription-repair coupling factor GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281)) iprscan interpro
DB: HMMTigr 		null null null 0.0 avd:AvCA6_14570
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=5 to=352 evalue=1.6e-88) iprscan interpro
DB: superfamily 		null null null 1.60e-88 avd:AvCA6_14570
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=560 to=853 evalue=3.0e-74) iprscan interpro
DB: superfamily 		null null null 3.00e-74 avd:AvCA6_14570
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=794 to=1004 evalue=1.3e-53) iprscan interpro
DB: superfamily 		null null null 1.30e-53 avd:AvCA6_14570
TRCF domain-like (db=superfamily db_id=SSF143517 from=1005 to=1158 evalue=1.3e-39) iprscan interpro
DB: superfamily 		null null null 1.30e-39 avd:AvCA6_14570
no description (db=HMMSmart db_id=SM00487 from=612 to=802 evalue=3.5e-33 interpro_id=IPR014001 interpro_description=DEAD-like helicase, N-terminal) iprscan interpro
DB: HMMSmart 		null null null 3.50e-33 avd:AvCA6_14570
TRCF (db=HMMPfam db_id=PF03461 from=1020 to=1119 evalue=2.7e-27 interpro_id=IPR005118 interpro_description=Transcription-repair-coupling factor GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281)) iprscan interpro
DB: HMMPfam 		null null null 2.70e-27 avd:AvCA6_14570
CarD_TRCF (db=HMMPfam db_id=PF02559 from=491 to=587 evalue=1.8e-25 interpro_id=IPR003711 interpro_description=Transcription factor CarD GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMPfam 		null null null 1.80e-25 avd:AvCA6_14570
CarD-like (db=superfamily db_id=SSF141259 from=481 to=560 evalue=7.5e-25) iprscan interpro
DB: superfamily 		null null null 7.50e-25 avd:AvCA6_14570
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=131 to=219 evalue=1.8e-23) iprscan interpro
DB: Gene3D 		null null null 1.80e-23 avd:AvCA6_14570
DEAD (db=HMMPfam db_id=PF00270 from=617 to=777 evalue=2.9e-22 interpro_id=IPR011545 interpro_description=DNA/RNA helicase, DEAD/DEAH box type, N-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026)) iprscan interpro
DB: HMMPfam 		null null null 2.90e-22 avd:AvCA6_14570
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=357 to=480 evalue=1.1e-18) iprscan interpro
DB: superfamily 		null null null 1.10e-18 avd:AvCA6_14570
no description (db=HMMSmart db_id=SM00490 from=838 to=922 evalue=1.3e-16 interpro_id=IPR001650 interpro_description=DNA/RNA helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: HMMSmart 		null null null 1.30e-16 avd:AvCA6_14570
Helicase_C (db=HMMPfam db_id=PF00271 from=851 to=921 evalue=4.2e-12 interpro_id=IPR001650 interpro_description=DNA/RNA helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: HMMPfam 		null null null 4.20e-12 avd:AvCA6_14570
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=804 to=933 evalue=1.6e-10) iprscan interpro
DB: Gene3D 		null null null 1.60e-10 avd:AvCA6_14570
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=617 to=795 evalue=4.3e-07) iprscan interpro
DB: Gene3D 		null null null 4.30e-07 avd:AvCA6_14570
DEAD BOX ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967 from=284 to=930 evalue=0.00068) iprscan interpro
DB: HMMPanther 		null null null 6.80e-04 avd:AvCA6_14570
HELICASE_CTER (db=ProfileScan db_id=PS51194 from=812 to=966 evalue=14.199 interpro_id=IPR001650 interpro_description=DNA/RNA helicase, C-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: helicase activity (GO:0004386), Molecular Function: ATP binding (GO:0005524)) iprscan interpro
DB: ProfileScan 		null null null 1.42e+01 avd:AvCA6_14570
HELICASE_ATP_BIND_1 (db=ProfileScan db_id=PS51192 from=630 to=791 evalue=24.989 interpro_id=IPR014021 interpro_description=Helicase, superfamily 1/2, ATP-binding domain) iprscan interpro
DB: ProfileScan 		null null null 2.50e+01 avd:AvCA6_14570
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=77133 species="Bacteria; env UNIPROT
DB: UniProtKB 		100.0 999.99 2296 0.0 K2ESW4_9BACT
Transcription-repair coupling factor n=3 Tax=Azotobacter vinelandii RepID=C1DR00_AZOVD similarity UNIREF
DB: UNIREF90 		55.2 null 1249 0.0 avd:AvCA6_14570