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rifcsplowo2_01_scaffold_6432

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_6432_1
CG_Pacearch_04, Pacearchaeota, Archaea

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2..226
-----------------
DNA (225bp)
protein (75aa)
Haloacid dehalogenase-like hydrolase, putative n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IH75_ACIB4 id=5103441 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Haloacid dehalogenase-like hydrolase, putative Tax=CG_Pacearch_04
rifcsplowo2_01_scaffold_6432_2
unknown

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252..575
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6432_3
unknown

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626..832
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6432_4
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(1011..1727)
-----------------
DNA (717bp)
protein (239aa)
hypothetical protein n=1 Tax=Crenarchaeota archaeon SCGC AAA471-L14 RepID=UPI0003630443
exsb protein; K06920 queuosine biosynthesis protein QueC Tax=RBG_13_Pacearchaeota_36_9_curated
exsb protein
rifcsplowo2_01_scaffold_6432_5
unknown

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1778..1975
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6432_6
ACD3, Gracilibacteria, Bacteria

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comp(2023..3120)
-----------------
DNA (1098bp)
protein (366aa)
hypothetical protein Tax=ACD3
hypothetical protein id=50135 bin=ACD3 species=ACD3 genus=ACD3 taxon_order=ACD3 taxon_class=ACD3 phylum=BD1-5 tax=ACD3 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
rifcsplowo2_01_scaffold_6432_7

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3237..4148
-----------------
DNA (912bp)
protein (304aa)
Undecaprenyl-phosphate galactose phosphotransferase {ECO:0000313|EMBL:KHO52473.1}; EC=2.7.8.6 {ECO:0000313|EMBL:KHO52473.1};; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
Heptosyltransferase II n=1 Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AKB3_IGNAJ id=5103416 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Heptosyltransferase II
rifcsplowo2_01_scaffold_6432_8

Not on your lists

comp(4223..5329)
-----------------
DNA (1107bp)
protein (369aa)
glutamate dehydrogenase (NADP)+ (EC:1.4.1.3)
Glutamate dehydrogenase (NAD(P)+) id=4845865 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
rifcsplowo2_01_scaffold_6432_9

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5643..6890
-----------------
DNA (1248bp)
protein (416aa)
Amino acid permease n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUD9_METCG id=5103485 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Amino acid permease
Amino acid permease {ECO:0000313|EMBL:AJF62766.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_6432_10
AR18, Woesearchaeaota, DPANN, Archaea

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7026..7307
-----------------
DNA (282bp)
protein (94aa)
hypothetical protein; K09728 hypothetical protein id=5045726 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein; K09728 hypothetical protein Tax=AR18
hypothetical protein
rifcsplowo2_01_scaffold_6432_11
unknown

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7309..7743
-----------------
DNA (435bp)
protein (145aa)
Adenylate kinase n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AKF5_METOI id=5102891 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Adenylate kinase n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AKF5_METOI Tax=AR20
Adenylate kinase
rifcsplowo2_01_scaffold_6432_12
AR18, Woesearchaeaota, DPANN, Archaea

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comp(7727..8227)
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein; K07254 tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] id=5048263 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein; K07254 tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] Tax=AR18
hypothetical protein
rifcsplowo2_01_scaffold_6432_13
unknown

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8278..9141
-----------------
DNA (864bp)
protein (288aa)
Protein-export membrane protein SecF n=1 Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=A6UVS2_META3 Tax=AR20
Protein-export membrane protein SecF
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=5045761 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsplowo2_01_scaffold_6432_14

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9138..10673
-----------------
DNA (1536bp)
protein (512aa)
SecD/SecF/SecDF export membrane protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEL5_9EURY id=5102895 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
SecD/SecF/SecDF export membrane protein
SecD/SecF/SecDF export membrane protein {ECO:0000313|EMBL:AJF62176.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_6432_15
unknown

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10666..11043
-----------------
DNA (378bp)
protein (126aa)

This feature has no annotations

rifcsplowo2_01_scaffold_6432_16
AR9, Woesearchaeaota, DPANN, Archaea

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11410..12219
-----------------
DNA (810bp)
protein (270aa)
id=3506436 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Tax=AR9
rifcsplowo2_01_scaffold_6432_17
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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13088..13579
-----------------
DNA (492bp)
protein (164aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsplowo2_01_scaffold_6432_18
RLO_Nitrospinae_47_7, Nitrospirae, Bacteria

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comp(13560..14153)
-----------------
DNA (594bp)
protein (198aa)
Transglycosylase SLT domain protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PCN5_9DELT
transglycosylase SLT domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_47_7_curated
hypothetical protein
rifcsplowo2_01_scaffold_6432_19
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(14200..15672)
-----------------
DNA (1473bp)
protein (491aa)
AMP phosphohydrolase; K00758 thymidine phosphorylase [EC:2.4.2.4] Tax=CG_Woesearch_02
AMP phosphohydrolase; K00758 thymidine phosphorylase [EC:2.4.2.4] id=5043588 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
thymidine phosphorylase
rifcsplowo2_01_scaffold_6432_20
unknown

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comp(15656..16624)
-----------------
DNA (969bp)
protein (323aa)
Uncharacterized protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8JAG4_HALJB id=5102898 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8JAG4_HALJB Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_6432_21

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comp(16821..17687)
-----------------
DNA (867bp)
protein (289aa)
Parallel beta-helix repeat protein n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BAF8_METIK
Uncharacterized protein {ECO:0000313|EMBL:CEG11477.1}; TaxID=717931 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
parallel beta-helix repeat-containing protein
rifcsplowo2_01_scaffold_6432_22
R_RIF_OD1_06_33_9, RIF-OD1-6, Parcubacteria, Bacteria

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comp(17722..18144)
-----------------
DNA (423bp)
protein (141aa)
Complete genome; segment 5/17 n=1 Tax=Photorhabdus luminescens subsp. laumondii (strain TT01) RepID=Q7N6X7_PHOLL
hypothetical protein; K08978 putative membrane protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_33_9_curated
hypothetical protein
rifcsplowo2_01_scaffold_6432_23

Not on your lists

18197..18757
-----------------
DNA (561bp)
protein (187aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL73217.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DNA-3-methyladenine glycosylase I id=1828201 bin=GWE2_CPR3_35_7 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
DNA-3-methyladenine glycosylase I
rifcsplowo2_01_scaffold_6432_24
CG_Woesearch_02, Woesearchaeota, Archaea

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18759..19424
-----------------
DNA (666bp)
protein (222aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000366B1A1
ATP binding protein; K06927 Tax=CG_Woesearch_02
universal metal-binding-domain/4Fe-4S-binding-domain-containing ABC transporter protein
rifcsplowo2_01_scaffold_6432_25

Not on your lists

comp(19402..19815)
-----------------
DNA (414bp)
protein (138aa)
Protein containing Nucleotide binding protein, PINc domain n=1 Tax=sediment metagenome RepID=D9PJC5_9ZZZZ
Protein containing Nucleotide binding protein, PINc protein
Protein containing Nucleotide binding protein, PINc domain {ECO:0000313|EMBL:EFK96340.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metageno
rifcsplowo2_01_scaffold_6432_26
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(19816..20043)
-----------------
DNA (228bp)
protein (76aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PJC6_9ZZZZ id=5103633 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein
rifcsplowo2_01_scaffold_6432_27
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(20097..20627)
-----------------
DNA (531bp)
protein (177aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000368F066
RNA-directed DNA polymerase Tax=CG_Pacearch_04
Retron-type reverse transcriptase
rifcsplowo2_01_scaffold_6432_28

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comp(20624..21133)
-----------------
DNA (510bp)
protein (170aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036E1529
RNA-directed DNA polymerase Reverse transcriptase
RNA-directed DNA polymerase Reverse transcriptase {ECO:0000313|EMBL:AJF63168.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_6432_29
AR20, Woesearchaeaota, DPANN, Archaea

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comp(21427..21699)
-----------------
DNA (273bp)
protein (91aa)
hypothetical protein
id=5103895 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
Displaying 29 items

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