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rifcsplowo2_01_scaffold_42059_11

Organism: RIFCSPLOWO2_01_FULL_Archaea_35_10b

near complete RP 34 / 55 MC: 4 BSCG 9 / 51 ASCG 32 / 38 MC: 1
Location: 5152..5601

Top 3 Functional Annotations

Value Algorithm Source
NMD3-related protein; K07562 nonsense-mediated mRNA decay protein 3 Tax=CG_Woesearch_02 similarity UNIPROT
DB: UniProtKB
  • Identity: 41.0
  • Coverage: 139.0
  • Bit_score: 118
  • Evalue 6.70e-24
Predicted nonsense mediated mRNA decay protein id=5800424 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized similarity UNIREF
DB: UNIREF100
  • Identity: 36.8
  • Coverage: 144.0
  • Bit_score: 103
  • Evalue 2.10e-19
NMD3 family protein similarity KEGG
DB: KEGG
  • Identity: 29.5
  • Coverage: 149.0
  • Bit_score: 80
  • Evalue 4.10e-13

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Taxonomy

CG_Woesearch_02 → Woesearchaeota → Archaea

Sequences

DNA sequence
Length: 450
ATGCAACCAAAACCATCAAGTTATTTTGAAGGGATGCTGCAGCTAAGGGATGTAAATGACGAAGTAATTGATTTTGCAGTCAGAGAAATCAAAAATAGTGATGTAAATATAGCGAAAATAAAACAATTGGAGAATGGAATTGATCTTTATGTATCAAGGCAGAGATTTTTAAGGACTATTGCAGGCAGGCTGCAGAAAAGATTCGGGGGCCAGATTATTGTGAGCAGGAAGCTGCATACAAAAAGCAGGCTCACAAGCAGGGATTTATACAGGGTAAATGTGCTTTTTAGGCTGCCATACTTTAAAAAAGGCGATGTAATTGAATACAAAGGGGATAAAATAAGAATAGTAAATATGGGAAAAAAGATATTTGCAAAAAATATTGCGACTGGAGAGAAACTCAACCTTGGCTACAAGGATTTGATTAGATATTCCCTGCTTTTCTTGTAA
PROTEIN sequence
Length: 150
MQPKPSSYFEGMLQLRDVNDEVIDFAVREIKNSDVNIAKIKQLENGIDLYVSRQRFLRTIAGRLQKRFGGQIIVSRKLHTKSRLTSRDLYRVNVLFRLPYFKKGDVIEYKGDKIRIVNMGKKIFAKNIATGEKLNLGYKDLIRYSLLFL*