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rifcsplowo2_01_scaffold_19343

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_19343_1
unknown

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419..877
-----------------
DNA (459bp)
protein (153aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19343_2
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(956..2317)
-----------------
DNA (1362bp)
protein (454aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] id=5042240 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=AR5
glutamyl-tRNA(Gln) amidotransferase subunit B
rifcsplowo2_01_scaffold_19343_3
CG_CPR16-01, CG_CPR16, Bacteria

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comp(2323..2877)
-----------------
DNA (555bp)
protein (185aa)
GCN5-related N-acetyltransferase n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGI7_9EURY id=87243 bin=ACD58 species=Candidatus Parvarchaeum acidiphilum genus=Candidatus Parvarchaeum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
acetyltransferase Tax=CG_CPR16-01
Sortase, related acyltransferase
rifcsplowo2_01_scaffold_19343_4
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(2874..4220)
-----------------
DNA (1347bp)
protein (449aa)
glutamyl-tRNA(Gln) amidotransferase, A subunit; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=5042237 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:6.3.5.-) Tax=AR5
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A (EC:6.3.5.6)
rifcsplowo2_01_scaffold_19343_5
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(4217..4489)
-----------------
DNA (273bp)
protein (91aa)
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=AR5
gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C (EC:6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit C id=4203367 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsplowo2_01_scaffold_19343_6
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(4520..4819)
-----------------
DNA (300bp)
protein (100aa)
PadR family transcriptional regulator n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZMY6_THELI
PadR family transcriptional regulator
PadR family transcriptional regulator {ECO:0000313|EMBL:EHR78676.1}; TaxID=523849 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus li
rifcsplowo2_01_scaffold_19343_7
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

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4891..5964
-----------------
DNA (1074bp)
protein (358aa)
dev:DhcVS_852 myo-inositol-1-phosphate synthase; K01858 myo-inositol-1-phosphate synthase [EC:5.5.1.4] id=1241312 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
ino1-like myo-inositol-1-phosphate synthase related
Tax=BJP_IG2158_Zixibacteria_48_33
rifcsplowo2_01_scaffold_19343_8

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comp(6178..7203)
-----------------
DNA (1026bp)
protein (342aa)
Cell division protein FtsZ 2 id=4759206 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
cell division protein FtsZ
rifcsplowo2_01_scaffold_19343_9
AR5, Aenigmarchaeota, DPANN, Archaea

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8068..8595
-----------------
DNA (528bp)
protein (176aa)
Putative uncharacterized protein id=18248560 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Putative uncharacterized protein Tax=AR5
rifcsplowo2_01_scaffold_19343_10
AR5, Aenigmarchaeota, DPANN, Archaea

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8731..9120
-----------------
DNA (390bp)
protein (130aa)
Translation initiation factor 5A id=3524332 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
aif5A; translation initiation factor 5A precursor (eIF-5A); K03263 translation initiation factor 5A Tax=AR5
aif5A; translation initiation factor 5A precursor (eIF-5A)
rifcsplowo2_01_scaffold_19343_11
unknown

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comp(9311..9457)
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19343_12
unknown

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9622..9837
-----------------
DNA (216bp)
protein (72aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19343_13
RIFOXYD1_FULL_OD1_36_11_curated, Parcubacteria, Bacteria

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9918..10403
-----------------
DNA (486bp)
protein (162aa)
hypothetical protein Tax=RIFOXYD1_FULL_OD1_36_11_curated
hypothetical protein id=15191637 bin=GWC1_OP11_49_16_COMPLETE species=Paenibacillus sp. HW567 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
rifcsplowo2_01_scaffold_19343_14
Methanocaldococcus fervens, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(10425..11717)
-----------------
DNA (1293bp)
protein (431aa)
aspC; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:ACV25291.1}; EC=6.1.1.12 {ECO:0000313|EMBL:ACV25291.1};; TaxID=573064 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae;
Aspartate--tRNA ligase n=1 Tax=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) RepID=C7P5B3_METFA rbh
rifcsplowo2_01_scaffold_19343_15
unknown

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comp(11839..12072)
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19343_16

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comp(12077..12736)
-----------------
DNA (660bp)
protein (220aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
ribonuclease HII (EC:3.1.26.4)
ribonuclease HII id=18248232 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rifcsplowo2_01_scaffold_19343_17
unknown

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13112..13552
-----------------
DNA (441bp)
protein (147aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19343_18
unknown

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13587..13775
-----------------
DNA (189bp)
protein (63aa)

This feature has no annotations

rifcsplowo2_01_scaffold_19343_19
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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14000..14218
-----------------
DNA (219bp)
protein (73aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T0YEX9_9ZZZZ
Uncharacterized protein Tax=RBG_16_Micrarchaeota_49_10_curated
hypothetical protein
rifcsplowo2_01_scaffold_19343_20
Ferroplasma sp. Type II, Ferroplasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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14219..14473
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein n=1 Tax=Ferroplasma sp. Type II RepID=T0NH92_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EQB72915.1}; TaxID=261388 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Ferroplasma; environmental samples.;" source="F
RelE protein
rifcsplowo2_01_scaffold_19343_21

Not on your lists

comp(14458..15402)
-----------------
DNA (945bp)
protein (315aa)
ski2-type helicase; K03726 helicase [EC:3.6.4.-] id=5042166 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
ATP-dependent DNA helicase Hel308 {ECO:0000256|HAMAP-Rule:MF_00442}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00442};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
helicase (EC:3.6.4.-)
Displaying 21 items

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