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rifcsphigho2_02_scaffold_1331_24

Organism: RIFCSPHIGHO2_02_FULL_Archaea_Woesearchaeota_28_36

near complete RP 37 / 55 MC: 3 BSCG 12 / 51 ASCG 36 / 38
Location: comp(20048..20362)

Top 3 Functional Annotations

Value Algorithm Source
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 49.4
  • Coverage: 77.0
  • Bit_score: 72
  • Evalue 5.90e-11
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Ther similarity UNIPROT
DB: UniProtKB
  • Identity: 49.4
  • Coverage: 77.0
  • Bit_score: 72
  • Evalue 2.90e-10
DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=RPOH_PYRHO similarity UNIREF
DB: UNIREF100
  • Identity: 51.3
  • Coverage: 78.0
  • Bit_score: 71
  • Evalue 6.10e-10

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Taxonomy

Palaeococcus pacificus → Palaeococcus → Thermococcales → Thermococci → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 315
GTGTTCAAAACTAATACTGTGTTTCAGTGTTTGTGTATATCACGTCCGGCCCGCACCTATAATAGAAAAAAAATGACTGAATTTAATATATTAAAGCATAGATGGGTACCTGAAAGTACTAAATTAACTGATGATGAAAAGTCAGAATTACTTAAAAAATACAATATTGATAGGGTAAAATTGGCTTATATAAGAATTAGTGATCCTGGAATCAAACATATTAATGATTTGAAGGTGGGAGATATCATAAAAATAAAGAGAATGAGTTATACAGCTAAAGAAACGATCTTTTATCGGGTGGTAGTTAATGGTTGA
PROTEIN sequence
Length: 105
VFKTNTVFQCLCISRPARTYNRKKMTEFNILKHRWVPESTKLTDDEKSELLKKYNIDRVKLAYIRISDPGIKHINDLKVGDIIKIKRMSYTAKETIFYRVVVNG*