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rifcsphigho2_02_scaffold_5181

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_5181_16S_1
unknown

Not on your lists

comp(1..900)
-----------------
DNA (900bp)
rifcsphigho2_02_scaffold_5181_1
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

1131..1805
-----------------
DNA (675bp)
protein (225aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000360BF4E
Pirin domain-containing protein
rifcsphigho2_02_scaffold_5181_2
unknown

Not on your lists

comp(1798..2208)
-----------------
DNA (411bp)
protein (137aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_3
unknown

Not on your lists

2422..3012
-----------------
DNA (591bp)
protein (197aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_4
unknown

Not on your lists

3022..3420
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_trna_1
unknown

Not on your lists

3555..3628
-----------------
DNA (74bp)
transferRNA
rifcsphigho2_02_scaffold_5181_5
unknown

Not on your lists

comp(3639..3929)
-----------------
DNA (291bp)
protein (97aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_6
Parcubacteria bacterium GW2011_GWC1_39_8, Parcubacteria, Bacteria

Not on your lists

4298..5302
-----------------
DNA (1005bp)
protein (335aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
hypothetical protein id=15190926 bin=GWC1_OP11_49_16_COMPLETE species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
rifcsphigho2_02_scaffold_5181_7
GWF2_WS6_complete_39_15, WS6, Bacteria

Not on your lists

5480..6715
-----------------
DNA (1236bp)
protein (412aa)
Uncharacterized protein id=5098782 bin=WS6_GWF2_39_15 species=WS6_CLOSED genus=WS6_CLOSED taxon_order=WS6_CLOSED taxon_class=WS6_CLOSED phylum=WS6 tax=WS6_GWF2_39_15 organism_group=WS6 (Doikabacteria) organism_desc=replace with complete version rbh
rifcsphigho2_02_scaffold_5181_8
unknown

Not on your lists

comp(6717..6980)
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_9
unknown

Not on your lists

comp(7136..7828)
-----------------
DNA (693bp)
protein (231aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_10
unknown

Not on your lists

comp(7825..8400)
-----------------
DNA (576bp)
protein (192aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_11
unknown

Not on your lists

8475..8774
-----------------
DNA (300bp)
protein (100aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_12
Togninia minima, Togninia, Calosphaeriales, Sordariomycetidae, Ascomycota, Fungi

Not on your lists

comp(8899..10206)
-----------------
DNA (1308bp)
protein (436aa)
PREDICTED: polyamine oxidase-like n=1 Tax=unknown RepID=UPI0001924C6A
similar to predicted protein
rifcsphigho2_02_scaffold_5181_13
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10430..11704)
-----------------
DNA (1275bp)
protein (425aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XL25_METZD
DEAD/DEAH box helicase
rifcsphigho2_02_scaffold_5181_14
unknown

Not on your lists

11804..12595
-----------------
DNA (792bp)
protein (264aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5181_15
GWC2_OP11_41_21, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

comp(12592..13149)
-----------------
DNA (558bp)
protein (186aa)
Methyltransferase type 11 n=1 Tax=uncultured bacterium RepID=K2A8F1_9BACT
Methyltransferase type 12
rifcsphigho2_02_scaffold_5181_16
Thermanaerovibrio acidaminovorans, Thermanaerovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(13368..14780)
-----------------
DNA (1413bp)
protein (471aa)
Cysteine--tRNA ligase n=1 Tax=Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) RepID=D1B5F3_THEAS
cysteinyl-tRNA synthetase
rifcsphigho2_02_scaffold_5181_17
RBG_13_Chloroflexi_50_21_curated, Chloroflexi, Bacteria

Not on your lists

comp(14801..16096)
-----------------
DNA (1296bp)
protein (432aa)
galactokinase n=1 Tax=Nocardiopsis synnemataformans RepID=UPI0003484359
galactokinase
rifcsphigho2_02_scaffold_5181_18
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(16121..18265)
-----------------
DNA (2145bp)
protein (715aa)
carB; Carbamoylphosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] id=5046262 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
carB; carbamoylphosphate synthase large subunit
rifcsphigho2_02_scaffold_5181_19
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(18262..18723)
-----------------
DNA (462bp)
protein (154aa)
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] id=5083890 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
carbamoyl-phosphate synthase, large subunit
rifcsphigho2_02_scaffold_5181_20
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18723..19193)
-----------------
DNA (471bp)
protein (157aa)
Carbamoyl-phosphate synthase large subunit n=1 Tax=Prevotella sp. CAG:873 RepID=R7J559_9BACT
carbamoyl-phosphate synthase, large subunit
rifcsphigho2_02_scaffold_5181_21

Not on your lists

comp(19180..19536)
-----------------
DNA (357bp)
protein (119aa)
Protein with tetrapyrrole methyltransferase and pyrophosphatase domains id=5800474 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
nucleotide pyrophosphohydrolase
rifcsphigho2_02_scaffold_5181_22
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(19533..20537)
-----------------
DNA (1005bp)
protein (335aa)
carA; Carbamoylphosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] id=5046264 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
carA; carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
rifcsphigho2_02_scaffold_5181_23
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

20595..20846
-----------------
DNA (252bp)
protein (84aa)
rifcsphigho2_02_scaffold_5181_24
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

20843..21436
-----------------
DNA (594bp)
protein (198aa)
thiamine biosynthesis protein ThiI
thiamine biosynthesis/tRNA modification protein ThiI; K03151 thiamine biosynthesis protein ThiI id=5241324 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsphigho2_02_scaffold_5181_25
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(21492..21716)
-----------------
DNA (225bp)
protein (75aa)
UPI000021CFC7 related cluster id=5800802 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_5181_26
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

21848..22495
-----------------
DNA (648bp)
protein (216aa)
Displaying 28 items

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