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rifcsphigho2_02_scaffold_5456

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsphigho2_02_scaffold_5456_1
unknown

Not on your lists

comp(3..1301)
-----------------
DNA (1299bp)
protein (433aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5456_2
unknown

Not on your lists

comp(1302..1844)
-----------------
DNA (543bp)
protein (181aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5456_3
unknown

Not on your lists

comp(1841..2086)
-----------------
DNA (246bp)
protein (82aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5456_trna_1
unknown

Not on your lists

comp(2197..2311)
-----------------
DNA (115bp)
transferRNA
rifcsphigho2_02_scaffold_5456_4
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists


comp(2302..4065)
-----------------
DNA (1764bp)
protein (588aa)
BSCG--tRNA--synthetase--aspartyl
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase id=5799880 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_02_scaffold_5456_5
unknown

Not on your lists

comp(4101..5213)
-----------------
DNA (1113bp)
protein (371aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5456_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5321..5908
-----------------
DNA (588bp)
protein (196aa)
orotate phosphoribosyltransferase (EC:2.4.2.10)
orotate phosphoribosyltransferase n=1 Tax=Leptotrichia shahii RepID=UPI00035C1AEC
rifcsphigho2_02_scaffold_5456_7

Not on your lists

5899..6702
-----------------
DNA (804bp)
protein (268aa)
pyrF; Orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
PREDICTED: uridine 5''''-monophosphate synthase n=1 Tax=Jaculus jaculus RepID=UPI0003332F29
rifcsphigho2_02_scaffold_5456_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(6677..7828)
-----------------
DNA (1152bp)
protein (384aa)
hypothetical protein id=5047527 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsphigho2_02_scaffold_5456_9

Not on your lists

comp(7852..8148)
-----------------
DNA (297bp)
protein (99aa)
50S ribosomal protein L12 n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AMI0_METOI
50S ribosomal protein L12
rifcsphigho2_02_scaffold_5456_10
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists


comp(8161..9003)
-----------------
DNA (843bp)
protein (281aa)
50S ribosomal protein L10 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VVQ4_9EURY
acidic ribosomal protein P0 RplPO
rifcsphigho2_02_scaffold_5456_11

Not on your lists


comp(9005..9655)
-----------------
DNA (651bp)
protein (217aa)
50S ribosomal protein L1 id=5800447 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L1
rifcsphigho2_02_scaffold_5456_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

9915..10985
-----------------
DNA (1071bp)
protein (357aa)
ORC1-type DNA replication protein id=5800648 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ORC1-type DNA replication protein
rifcsphigho2_02_scaffold_5456_13
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

10985..11722
-----------------
DNA (738bp)
protein (246aa)
Uncharacterized protein id=5799738 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsphigho2_02_scaffold_5456_14
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

11872..12309
-----------------
DNA (438bp)
protein (146aa)
NUDIX hydrolase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NH54_ROSCS
NUDIX hydrolase
rifcsphigho2_02_scaffold_5456_15
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

12302..13147
-----------------
DNA (846bp)
protein (282aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI0002E48010
hypothetical protein
rifcsphigho2_02_scaffold_5456_16
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

13122..13571
-----------------
DNA (450bp)
protein (150aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00037757EC
histidine triad (HIT) protein
rifcsphigho2_02_scaffold_5456_17
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13582..13836
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SL55_9BRAD
MtN3 and saliva related transmembrane protein
rifcsphigho2_02_scaffold_5456_18
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

14007..14732
-----------------
DNA (726bp)
protein (242aa)
hypothetical protein; K06869 uncharacterized protein id=5041645 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_02_scaffold_5456_19
unknown

Not on your lists

comp(14716..14889)
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5456_20
unknown

Not on your lists

comp(14886..15005)
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5456_21
unknown

Not on your lists

15210..15770
-----------------
DNA (561bp)
protein (187aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5456_22
RLO_OD1_Magasanikbacteria_43_12, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15751..15987)
-----------------
DNA (237bp)
protein (79aa)
hypothetical protein; K09131 hypothetical protein id=1244879 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rifcsphigho2_02_scaffold_5456_23
unknown

Not on your lists

comp(15984..16262)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5456_24
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(16417..17385)
-----------------
DNA (969bp)
protein (323aa)
Fe-S oxidoreductase n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LLG4_THEBM
Fe-S oxidoreductase
rifcsphigho2_02_scaffold_5456_25
unknown

Not on your lists

17473..17805
-----------------
DNA (333bp)
protein (111aa)

This feature has no annotations

Displaying 26 items

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